[ 源代码: r-bioc-gviz ]
软件包: r-bioc-gviz (1.30.3+dfsg-1)
r-bioc-gviz 的相关链接
Trisquel 的资源:
下载源码包 r-bioc-gviz:
- [r-bioc-gviz_1.30.3+dfsg-1.dsc]
- [r-bioc-gviz_1.30.3+dfsg.orig.tar.xz]
- [r-bioc-gviz_1.30.3+dfsg-1.debian.tar.xz]
维护者:
Original Maintainers:
- Debian R Packages Maintainers
- Andreas Tille
外部的资源:
- 主页 [bioconductor.org]
相似软件包:
Plotting data and annotation information along genomic coordinates
Genomic data analyses requires integrated visualization of known genomic information and new experimental data. Gviz uses the biomaRt and the rtracklayer packages to perform live annotation queries to Ensembl and UCSC and translates this to e.g. gene/transcript structures in viewports of the grid graphics package. This results in genomic information plotted together with your data.
其他与 r-bioc-gviz 有关的软件包
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- dep: r-api-3.5
- 本虚包由这些包填实: r-base-core
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- dep: r-api-bioc-3.10
- 本虚包由这些包填实: r-bioc-biocgenerics
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- dep: r-base-core (>= 3.6.2-2build1)
- GNU R core of statistical computation and graphics system
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- dep: r-bioc-annotationdbi (>= 1.27.5)
- GNU R Annotation Database Interface for BioConductor
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- dep: r-bioc-biobase (>= 2.15.3)
- base functions for Bioconductor
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- dep: r-bioc-biocgenerics (>= 0.11.3)
- generic functions for Bioconductor
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- dep: r-bioc-biomart (>= 2.11.0)
- GNU R Interface to BioMart databases (Ensembl, COSMIC, Wormbase and Gramene)
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- dep: r-bioc-biostrings (>= 2.33.11)
- GNU R string objects representing biological sequences
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- dep: r-bioc-biovizbase (>= 1.13.8)
- GNU R basic graphic utilities for visualization of genomic data
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- dep: r-bioc-bsgenome (>= 1.33.1)
- BioConductor infrastructure for Biostrings-based genome data packages
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- dep: r-bioc-genomeinfodb (>= 1.1.3)
- BioConductor utilities for manipulating chromosome identifiers
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- dep: r-bioc-genomicalignments (>= 1.1.16)
- BioConductor representation and manipulation of short genomic alignments
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- dep: r-bioc-genomicfeatures (>= 1.17.22)
- GNU R tools for making and manipulating transcript centric annotations
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- dep: r-bioc-genomicranges (>= 1.17.20)
- BioConductor representation and manipulation of genomic intervals
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- dep: r-bioc-iranges (>= 1.99.18)
- GNU R low-level containers for storing sets of integer ranges
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- dep: r-bioc-rsamtools (>= 1.17.28)
- GNU R binary alignment (BAM), variant call (BCF), or tabix file import
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- dep: r-bioc-rtracklayer (>= 1.25.13)
- GNU R interface to genome browsers and their annotation tracks
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- dep: r-bioc-s4vectors (>= 0.9.25)
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- dep: r-bioc-xvector (>= 0.5.7)
- BioConductor representation and manpulation of external sequences
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- dep: r-cran-digest (>= 0.6.8)
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- dep: r-cran-lattice
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- dep: r-cran-latticeextra (>= 0.6-26)
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- dep: r-cran-matrixstats (>= 0.8.14)
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- dep: r-cran-rcolorbrewer
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- sug: r-cran-knitr
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- sug: r-cran-rmarkdown
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