软件包: ruby-crb-blast (0.6.9-4)
ruby-crb-blast 的相关链接
Trisquel 的资源:
下载源码包 ruby-crb-blast:
- [ruby-crb-blast_0.6.9-4.dsc]
- [ruby-crb-blast_0.6.9.orig.tar.gz]
- [ruby-crb-blast_0.6.9-4.debian.tar.xz]
维护者:
Original Maintainers:
- Debian Ruby Extras Maintainers (Mail Archive)
- Michael R. Crusoe
外部的资源:
- 主页 [github.com]
相似软件包:
Run conditional reciprocal best blast
CRB-BLAST is a novel method for finding orthologs between one set of sequences and another. This is particularly useful in genome and transcriptome annotation.
CRB-BLAST initially performs a standard reciprocal best BLAST. It does this by performing BLAST alignments of query->target and target->query. Reciprocal best BLAST hits are those where the best match for any given query sequence in the query->target alignment is also the best hit of the match in the reverse (target->query) alignment.
Reciprocal best BLAST is a very conservative way to assign orthologs. The main innovation in CRB-BLAST is to learn an appropriate e-value cutoff to apply to each pairwise alignment by taking into account the overall relatedness of the two datasets being compared. This is done by fitting a function to the distribution of alignment e-values over sequence lengths. The function provides the e-value cutoff for a sequence of given length.
其他与 ruby-crb-blast 有关的软件包
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- dep: ncbi-blast+
- next generation suite of BLAST sequence search tools
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- dep: ruby
- Interpreter of object-oriented scripting language Ruby (default version)
- 或者 ruby-interpreter
- 软件包暂时不可用
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- dep: ruby-bio
- Ruby tools for computational molecular biology
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- dep: ruby-fixwhich
- ruby module that emulates the 'which' program
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- dep: ruby-threach
- Threaded each
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- dep: ruby-trollop
- command-line argument processing library