套件： progressivemauve (1.2.0+4713+dfsg-5build1)
progressivemauve 的相關超連結
Trisquel 的資源：
下載原始碼套件 progressivemauve：
- [progressivemauve_1.2.0+4713+dfsg-5build1.dsc]
- [progressivemauve_1.2.0+4713+dfsg.orig.tar.xz]
- [progressivemauve_1.2.0+4713+dfsg-5build1.debian.tar.xz]
維護者：
Original Maintainers:
- Debian Med Packaging Team (郵件存檔)
- Andreas Tille
外部的資源：
- 主頁 [darlinglab.org]
相似套件：
multiple genome alignment algorithms
The mauveAligner and progressiveMauve alignment algorithms have been implemented as command-line programs included with the downloadable Mauve software. When run from the command-line, these programs provide options not yet available in the graphical interface.
Mauve is a system for efficiently constructing multiple genome alignments in the presence of large-scale evolutionary events such as rearrangement and inversion. Multiple genome alignment provides a basis for research into comparative genomics and the study of evolutionary dynamics. Aligning whole genomes is a fundamentally different problem than aligning short sequences.
Mauve has been developed with the idea that a multiple genome aligner should require only modest computational resources. It employs algorithmic techniques that scale well in the amount of sequence being aligned. For example, a pair of Y. pestis genomes can be aligned in under a minute, while a group of 9 divergent Enterobacterial genomes can be aligned in a few hours.
Mauve computes and interactively visualizes genome sequence comparisons. Using FastA or GenBank sequence data, Mauve constructs multiple genome alignments that identify large-scale rearrangement, gene gain, gene loss, indels, and nucleotide substutition.
Mauve is developed at the University of Wisconsin.
其他與 progressivemauve 有關的套件
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- dep: libboost-filesystem1.74.0 (>= 1.74.0)
- filesystem operations (portable paths, iteration over directories, etc) in C++
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- dep: libboost-iostreams1.74.0 (>= 1.74.0)
- Boost.Iostreams Library
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- dep: libboost-program-options1.74.0 (>= 1.74.0)
- program options library for C++
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- dep: libc6 (>= 2.29)
- GNU C Library: Shared libraries
同時作為一個虛擬套件由這些套件提供： libc6-udeb
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- dep: libgcc-s1 (>= 3.5)
- GCC support library
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- dep: libgenome0 (>= 1.3.11+svn20110227.4616)
- toolkit for developing bioinformatic related software
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- dep: libmems1 (>= 1.6.0+4725)
- library to support DNA string matching and comparative genomics
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- dep: libstdc++6 (>= 5.2)
- GNU Standard C++ Library v3
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- enh: mauve-aligner
- multiple genome alignment