Skip to content
Sections
>> Trisquel >> 套件 >> aramo >> misc >> med-bio-dev
[  etiona  ] [  nabia  ] [  aramo  ]
[ 原始碼： debian-med  ]

套件： med-bio-dev (3.7.1)

Debian Med packages for development of bioinformatics applications

This metapackage will install Debian packages which might be helpful for development of applications for biological research.

其他與 med-bio-dev 有關的套件

  • 依賴
  • 推薦
  • 建議
  • dep: med-config (= 3.7.1)
    Debian Med general config package
  • dep: med-tasks (= 3.7.1)
    Debian Med tasks for tasksel
  • sug: bioclipse
    套件暫時不可用
  • sug: conda-package-handling
    create and extract conda packages of various formats
  • sug: ctdconverter
    Convert CTD files into Galaxy tool and CWL CommandLineTool files
  • sug: cthreadpool-dev
    minimal ANSI C thread pool - development files
  • sug: cwlformat
    code formatter for Common Workflow Language
  • sug: libargs-dev
    simple header-only C++ argument parser library
  • sug: libatomicqueue-dev
    套件暫時不可用
  • sug: libbam-dev
    manipulates nucleotide sequence alignments in BAM or SAM format
  • sug: libbbhash-dev
    bloom-filter based minimal perfect hash function library
  • sug: libconcurrentqueue-dev
    industrial-strength lock-free queue for C++
  • sug: libdisorder-dev
    library for entropy measurement of byte streams (devel)
  • sug: libfast-perl
    套件暫時不可用
  • sug: libforester-java
    套件暫時不可用
  • sug: libfreecontact-dev
    fast protein contact predictor library - development files
    同時作為一個虛擬套件由這些套件提供： libfreecontact-dev
  • sug: libfreecontact-doc
    documentation for libfreecontact
  • sug: libfreecontact-perl
    fast protein contact predictor - binding for Perl
  • sug: libmaus2-dev
    collection of data structures and algorithms for biobambam (devel)
  • sug: libmilib-java
    library for Next Generation Sequencing (NGS) data processing
  • sug: libminimap-dev
    development headers for libminimap
  • sug: libmodhmm-dev
    library for constructing, training and scoring hidden Markov models (dev)
  • sug: libnexml-java
    套件暫時不可用
  • sug: libpbcopper-dev
    data structures, algorithms, and utilities for C++ applications -- header files
  • sug: libqcpp-dev
    套件暫時不可用
  • sug: librelion-dev
    套件暫時不可用
  • sug: libroadrunner-dev
    套件暫時不可用
  • sug: librostlab-blast-doc
    very fast C++ library for parsing the output of NCBI BLAST programs (doc)
  • sug: librostlab-doc
    C++ library for computational biology (documentation)
  • sug: libssu-dev
    high-performance phylogenetic diversity calculations (dev)
  • sug: libsuma-dev
    headers and static library for sumatra and sumaclust
  • sug: libsvmloc-dev
    PSORTb adapted library for svm machine-learning library (dev)
  • sug: libswarm2-dev
    套件暫時不可用
  • sug: libtfbs-perl
    scanning DNA sequence with a position weight matrix
  • sug: libxxsds-dynamic-dev
    succinct and compressed fully-dynamic data structures library
  • sug: octace-bioinfo
    套件暫時不可用
  • sug: python-biopython-doc
    Documentation for the Biopython library
  • sug: python3-alignlib
    edit and Hamming distances for biological sequences
  • sug: python3-bcbio
    套件暫時不可用
  • sug: python3-bel-resources
    Python3 utilities for BEL resource files
  • sug: python3-biopython-sql
    Biopython support for the BioSQL database schema (Python 3)
  • sug: python3-cogent3
    framework for genomic biology
  • sug: python3-compclust
    套件暫時不可用
  • sug: python3-consensuscore2
    套件暫時不可用
  • sug: python3-cooler
    library for a sparse, compressed, binary persistent storage
  • sug: python3-ctdopts
    Gives your Python tools a CTD-compatible interface
  • sug: python3-ete3
    Python Environment for (phylogenetic) Tree Exploration - Python 3.X
  • sug: python3-galaxy-lib
    套件暫時不可用
  • sug: python3-intake
    lightweight package for finding and investigating data
  • sug: python3-joypy
    ridgeline-/joyplots plotting routine
  • sug: python3-mcaller
    套件暫時不可用
  • sug: python3-misopy
    套件暫時不可用
  • sug: python3-ncls
    datastructure for interval overlap queries
  • sug: python3-networkx
    tool to create, manipulate and study complex networks (Python3)
  • sug: python3-pangolearn
    套件暫時不可用
  • sug: python3-pycosat
    Python bindings to picosat
  • sug: python3-pyflow
    lightweight parallel task engine for Python
  • sug: python3-roadrunner
    套件暫時不可用
  • sug: python3-scanpy
    套件暫時不可用
  • sug: python3-seqcluster
    套件暫時不可用
  • sug: python3-skbio
    Python3 data structures, algorithms, educational resources for bioinformatic
  • sug: python3-torch
    Tensors and Dynamic neural networks in Python (Python Interface)
  • sug: python3-unifrac
    high-performance phylogenetic diversity calculations
  • sug: q2-alignment
    QIIME 2 plugin for generating and manipulating alignments
  • sug: q2-composition
    套件暫時不可用
  • sug: q2-cutadapt
    QIIME 2 plugin to work with adapters in sequence data
  • sug: q2-dada2
    QIIME 2 plugin to work with adapters in sequence data
  • sug: q2-deblur
    套件暫時不可用
  • sug: q2-demux
    QIIME 2 plugin for demultiplexing of sequence reads
  • sug: q2-diversity
    套件暫時不可用
  • sug: q2-emperor
    套件暫時不可用
  • sug: q2-feature-classifier
    QIIME 2 plugin supporting taxonomic classification
  • sug: q2-feature-table
    QIIME 2 plugin supporting operations on feature tables
  • sug: q2-fragment-insertion
    QIIME 2 plugin for fragment insertion
  • sug: q2-gneiss
    套件暫時不可用
  • sug: q2-longitudinal
    套件暫時不可用
  • sug: q2-metadata
    QIIME 2 plugin for working with and visualizing Metadata
  • sug: q2-phylogeny
    QIIME 2 plugin for phylogeny
  • sug: q2-quality-control
    QIIME 2 plugin for quality assurance of feature and sequence data
  • sug: q2-quality-filter
    QIIME2 plugin for PHRED-based filtering and trimming
  • sug: q2-sample-classifier
    QIIME 2 plugin for machine learning prediction of sample data
  • sug: q2-shogun
    套件暫時不可用
  • sug: q2-taxa
    QIIME 2 plugin for working with feature taxonomy annotations
  • sug: q2-types
    QIIME 2 plugin defining types for microbiome analysis
  • sug: q2-vsearch
    套件暫時不可用
  • sug: q2cli
    套件暫時不可用
  • sug: q2cwl
    套件暫時不可用
  • sug: q2lint
    套件暫時不可用
  • sug: q2templates
    Design template package for QIIME 2 Plugins
  • sug: qiime
    Quantitative Insights Into Microbial Ecology
  • sug: r-bioc-affxparser
    Affymetrix File Parsing SDK
  • sug: r-bioc-affy
    BioConductor methods for Affymetrix Oligonucleotide Arrays
  • sug: r-bioc-affyio
    BioConductor tools for parsing Affymetrix data files
  • sug: r-bioc-altcdfenvs
    BioConductor alternative CDF environments
  • sug: r-bioc-annotate
    BioConductor annotation for microarrays
  • sug: r-bioc-annotationdbi
    GNU R Annotation Database Interface for BioConductor
  • sug: r-bioc-annotationhub
    GNU R client to access AnnotationHub resources
  • sug: r-bioc-aroma.light
    BioConductor methods normalization and visualization of microarray data
  • sug: r-bioc-arrayexpress
    access to the ArrayExpress Microarray Database at EBI
  • sug: r-bioc-biocgenerics
    generic functions for Bioconductor
  • sug: r-bioc-biocneighbors
    Nearest Neighbor Detection for Bioconductor Packages
  • sug: r-bioc-biomart
    GNU R Interface to BioMart databases (Ensembl, COSMIC, Wormbase and Gramene)
  • sug: r-bioc-biomformat
    GNU R interface package for the BIOM file format
  • sug: r-bioc-biostrings
    GNU R string objects representing biological sequences
  • sug: r-bioc-biovizbase
    GNU R basic graphic utilities for visualization of genomic data
  • sug: r-bioc-bitseq
    transcript expression inference and analysis for RNA-seq data
  • sug: r-bioc-bridgedbr
    套件暫時不可用
  • sug: r-bioc-bsgenome
    BioConductor infrastructure for Biostrings-based genome data packages
  • sug: r-bioc-cager
    套件暫時不可用
  • sug: r-bioc-cner
    CNE Detection and Visualization
  • sug: r-bioc-complexheatmap
    make complex heatmaps using GNU R
  • sug: r-bioc-ctc
    Cluster and Tree Conversion
  • sug: r-bioc-cummerbund
    tool for analysis of Cufflinks RNA-Seq output
  • sug: r-bioc-dada2
    sample inference from amplicon sequencing data
  • sug: r-bioc-deseq
    GNU R differential gene expression analysis
  • sug: r-bioc-deseq2
    R package for RNA-Seq Differential Expression Analysis
  • sug: r-bioc-dnacopy
    R package: DNA copy number data analysis
  • sug: r-bioc-ebseq
    R package for RNA-Seq Differential Expression Analysis
  • sug: r-bioc-enrichedheatmap
    套件暫時不可用
  • sug: r-bioc-ensembldb
    GNU R utilities to create and use an Ensembl based annotation database
  • sug: r-bioc-genefilter
    methods for filtering genes from microarray experiments
  • sug: r-bioc-geneplotter
    R package of functions for plotting genomic data
  • sug: r-bioc-genomeinfodb
    BioConductor utilities for manipulating chromosome identifiers
  • sug: r-bioc-genomicalignments
    BioConductor representation and manipulation of short genomic alignments
  • sug: r-bioc-genomicfeatures
    GNU R tools for making and manipulating transcript centric annotations
  • sug: r-bioc-genomicranges
    BioConductor representation and manipulation of genomic intervals
  • sug: r-bioc-geoquery
    Get data from NCBI Gene Expression Omnibus (GEO)
  • sug: r-bioc-go.db
    annotation maps describing the entire Gene Ontology
  • sug: r-bioc-graph
    handle graph data structures for BioConductor
  • sug: r-bioc-gseabase
    Gene set enrichment data structures and methods
  • sug: r-bioc-gsva
    Gene Set Variation Analysis for microarray and RNA-seq data
  • sug: r-bioc-gviz
    Plotting data and annotation information along genomic coordinates
  • sug: r-bioc-hypergraph
    BioConductor hypergraph data structures
  • sug: r-bioc-impute
    Imputation for microarray data
  • sug: r-bioc-iranges
    GNU R low-level containers for storing sets of integer ranges
  • sug: r-bioc-limma
    linear models for microarray data
  • sug: r-bioc-makecdfenv
    BioConductor CDF Environment Maker
  • sug: r-bioc-mergeomics
    Integrative network analysis of omics data
  • sug: r-bioc-metagenomeseq
    GNU R statistical analysis for sparse high-throughput sequencing
  • sug: r-bioc-mofa
    Multi-Omics Factor Analysis (MOFA)
  • sug: r-bioc-multiassayexperiment
    Software for integrating multi-omics experiments in BioConductor
  • sug: r-bioc-nanostringqcpro
    processing and QA for NanoString mRNA expression data
  • sug: r-bioc-oligo
    Preprocessing tools for oligonucleotide arrays
  • sug: r-bioc-oligoclasses
    Classes for high-throughput arrays supported by oligo and crlmm
  • sug: r-bioc-org.hs.eg.db
    genome-wide annotation for Human
  • sug: r-bioc-pcamethods
    BioConductor collection of PCA methods
  • sug: r-bioc-phyloseq
    GNU R handling and analysis of high-throughput microbiome census data
  • sug: r-bioc-preprocesscore
    BioConductor collection of pre-processing functions
  • sug: r-bioc-purecn
    copy number calling and SNV classification using targeted short read sequencing
  • sug: r-bioc-qusage
    qusage: Quantitative Set Analysis for Gene Expression
  • sug: r-bioc-rbgl
    R interface to the graph algorithms contained in the BOOST library
  • sug: r-bioc-rentrez
    套件暫時不可用
  • sug: r-bioc-rsamtools
    GNU R binary alignment (BAM), variant call (BCF), or tabix file import
  • sug: r-bioc-rtracklayer
    GNU R interface to genome browsers and their annotation tracks
  • sug: r-bioc-s4vectors
    BioConductor S4 implementation of vectors and lists
  • sug: r-bioc-savr
    GNU R parse and analyze Illumina SAV files
  • sug: r-bioc-shortread
    GNU R classes and methods for high-throughput short-read sequencing data
  • sug: r-bioc-snpstats
    BioConductor SnpMatrix and XSnpMatrix classes and methods
  • sug: r-bioc-structuralvariantannotation
    Variant annotations for structural variants
  • sug: r-bioc-tfbstools
    GNU R Transcription Factor Binding Site (TFBS) Analysis
  • sug: r-bioc-titancna
    Subclonal copy number and LOH prediction from whole genome sequencing
  • sug: r-bioc-tximport
    transcript-level estimates for biological sequencing
  • sug: r-bioc-variantannotation
    BioConductor annotation of genetic variants
  • sug: r-bioc-xvector
    BioConductor representation and manpulation of external sequences
  • sug: r-cran-adegenet
    GNU R exploratory analysis of genetic and genomic data
  • sug: r-cran-adephylo
    GNU R exploratory analyses for the phylogenetic comparative method
  • sug: r-cran-amap
    Another Multidimensional Analysis Package
  • sug: r-cran-biwt
    biweight mean vector and covariance and correlation
  • sug: r-cran-drinsight
    套件暫時不可用
  • sug: r-cran-dt
    GNU R wrapper of the JavaScript library 'DataTables'
  • sug: r-cran-dynamictreecut
    Methods for Detection of Clusters in Hierarchical Clustering
  • sug: r-cran-fastcluster
    Fast hierarchical clustering routines for GNU R
  • sug: r-cran-future.apply
    apply function to elements in parallel using futures
  • sug: r-cran-future.batchtools
    Future API for Parallel and Distributed Processing
  • sug: r-cran-gprofiler
    Interface to the 'g:Profiler' Toolkit
  • sug: r-cran-ica
    Independent Component Analysis
  • sug: r-cran-itertools
    Iterator Tools
  • sug: r-cran-kaos
    Encoding of Sequences Based on Frequency Matrix Chaos
  • sug: r-cran-metap
    Meta-Analysis of Significance Values
  • sug: r-cran-minerva
    Maximal Information-Based Nonparametric Exploration
  • sug: r-cran-natserv
    GNU R 'NatureServe' Interface
  • sug: r-cran-nmf
    GNU R framework to perform non-negative matrix factorization
  • sug: r-cran-optimalcutpoints
    Computing Optimal Cutpoints in Diagnostic Tests
  • sug: r-cran-parmigene
    Parallel Mutual Information to establish Gene Networks
  • sug: r-cran-pcapp
    Robust PCA by Projection Pursuit
  • sug: r-cran-proc
    Display and Analyze ROC Curves
  • sug: r-cran-rann
    Fast Nearest Neighbour Search Using L2 Metric
  • sug: r-cran-rcpphnsw
    R bindings for a Library for Approximate Nearest Neighbors
  • sug: r-cran-robustrankaggreg
    Methods for robust rank aggregation
  • sug: r-cran-rocr
    GNU R package to prepare and display ROC curves
  • sug: r-cran-rook
    web server interface for R
  • sug: r-cran-rsvd
    Randomized Singular Value Decomposition
  • sug: r-cran-shazam
    Immunoglobulin Somatic Hypermutation Analysis
  • sug: r-cran-sitmo
    GNU R parallel pseudo random number generator 'sitmo' header files
  • sug: r-cran-venndiagram
    Generate High-Resolution Venn and Euler Plots
  • sug: r-other-apmswapp
    套件暫時不可用
  • sug: ruby-rgfa
    parse, edit and write GFA format graphs in Ruby
  • sug: vdjtools
    套件暫時不可用

下載 med-bio-dev

下載可用於所有硬體架構的
硬體架構 套件大小 安裝後大小 檔案
all 5.5 kB44 kB [文件列表]