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[ 原始碼: quicktree  ]

套件: quicktree (2.5-5)

Neighbor-Joining algorithm for phylogenies

QuickTree is an efficient implementation of the Neighbor-Joining algorithm (PMID: 3447015), capable of reconstructing phylogenies from huge alignments in time less than the age of the universe.

QuickTree accepts both distance matrix and multiple-sequence-aligment inputs. The former should be in PHYLIP format. The latter should be in Stockholm format, which is the native alignment format for the Pfam database. Alignments in various formats can be converted to Stockholm format with the sreformat program, which is part of the HMMer package (hmmer.org).

The tress are written to stdout, in the Newick/New-Hampshire format use by PHYLIP and many other programs

其他與 quicktree 有關的套件

  • 依賴
  • 推薦
  • 建議
  • dep: libc6 (>= 2.29)
    GNU C Library: Shared libraries
    同時作為一個虛擬套件由這些套件提供: libc6-udeb
  • sug: hmmer
    profile hidden Markov models for protein sequence analysis
    或者 hmmer2
    profile hidden Markov models for protein sequence analysis

下載 quicktree

下載可用於所有硬體架構的
硬體架構 套件大小 安裝後大小 檔案
amd64 20.7 kB57 kB [文件列表]
arm64 19.3 kB56 kB [文件列表]
armhf 17.6 kB44 kB [文件列表]
ppc64el 27.4 kB85 kB [文件列表]