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[ 原始碼: libseqlib  ]

套件: libseqlib0 (1.1.1+dfsg-5)

C++ htslib/bwa-mem/fermi interface for interrogating sequence data

C++ API and command line tool that provides a rapid and user-friendly interface to BAM/SAM/CRAM files, global sequence alignment operations and sequence assembly. Four C libraries perform core operations in SeqLib: HTSlib for BAM access, BWA-MEM and BLAT for sequence alignment and Fermi for error correction and sequence assembly. Benchmarking indicates that SeqLib has lower CPU and memory requirements than leading C++ sequence analysis APIs. Minimal SeqLib code can extract, error-correct and assemble reads from a CRAM file and then align with BWA-MEM. SeqLib also provides additional capabilities, including chromosome-aware interval queries and read plotting. Command line tools are available for performing integrated error correction, micro-assemblies and alignment.

其他與 libseqlib0 有關的套件

  • 依賴
  • 推薦
  • 建議
  • dep: libc6 (>= 2.14)
    GNU C Library: Shared libraries
    同時作為一個虛擬套件由這些套件提供: libc6-udeb
  • dep: libgcc1 (>= 1:3.0)
    GCC support library
  • dep: libstdc++6 (>= 5.2)
    GNU Standard C++ Library v3
  • dep: zlib1g (>= 1:1.1.4)
    compression library - runtime

下載 libseqlib0

下載可用於所有硬體架構的
硬體架構 套件大小 安裝後大小 檔案
amd64 111.8 kB338 kB [文件列表]