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[ 原始碼: libbio-samtools-perl  ]

套件: libbio-samtools-perl (1.43-2build2)

Perl interface to SamTools library for DNA sequencing

Bio::SamTools provides a Perl interface to the libbam library for indexed and unindexed SAM/BAM sequence alignment databases. It provides support for retrieving information on individual alignments, read pairs, and alignment coverage information across large regions. It also provides callback functionality for calling SNPs and performing other base-by-base functions. Most operations are compatible with the BioPerl Bio::SeqFeatureI interface, allowing BAM files to be used as a backend to the GBrowse genome browser application.

其他與 libbio-samtools-perl 有關的套件

  • 依賴
  • 推薦
  • 建議
  • dep: libbio-perl-perl
    BioPerl core perl modules
  • dep: libc6 (>= 2.15)
    GNU C Library: Shared libraries
    同時作為一個虛擬套件由這些套件提供: libc6-udeb
  • dep: perl (>= 5.30.0-9ubuntu0.2)
    Larry Wall's Practical Extraction and Report Language
  • dep: perlapi-5.30.0
    本虛擬套件由這些套件提供: perl-base
  • dep: zlib1g (>= 1:1.2.3.3)
    compression library - runtime
  • enh: gbrowse
    GMOD Generic Genome Browser
  • enh: samtools
    processing sequence alignments in SAM, BAM and CRAM formats

下載 libbio-samtools-perl

下載可用於所有硬體架構的
硬體架構 套件大小 安裝後大小 檔案
amd64 188.1 kB630 kB [文件列表]
armhf 171.0 kB484 kB [文件列表]