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[ 原始碼: prank  ]

套件: prank (0.0.170427+dfsg-2build1)

prank 的相關超連結

prank

Trisquel 的資源:

下載原始碼套件 prank

維護者:

Original Maintainers:

  • Debian Med Packaging Team (郵件存檔)
  • Manuel Prinz
  • Andreas Tille

外部的資源:

相似套件:

Probabilistic Alignment Kit for DNA, codon and amino-acid sequences

PRANK is a probabilistic multiple alignment program for DNA, codon and amino-acid sequences. It's based on a novel algorithm that treats insertions correctly and avoids over-estimation of the number of deletion events. In addition, PRANK borrows ideas from maximum likelihood methods used in phylogenetics and correctly takes into account the evolutionary distances between sequences. Lastly, PRANK allows for defining a potential structure for sequences to be aligned and then, simultaneously with the alignment, predicts the locations of structural units in the sequences.

PRANK is a command-line program for UNIX-style environments but the same sequence alignment engine is implemented in the graphical program PRANKSTER. In addition to providing a user-friendly interface to those not familiar with Unix systems, PRANKSTER is an alignment browser for alignments saved in the HSAML format. The novel format allows for storing all the information generated by the aligner and the alignment browser is a convenient way to analyse and manipulate the data.

PRANK aims at an evolutionarily correct sequence alignment and often the result looks different from ones generated with other alignment methods. There are, however, cases where the different look is caused by violations of the method's assumptions. To understand why things may go wrong and how to avoid that, read this explanation of differences between PRANK and traditional progressive alignment methods.

其他與 prank 有關的套件

  • 依賴
  • 推薦
  • 建議
  • dep: libc6 (>= 2.29)
    GNU C Library: Shared libraries
    同時作為一個虛擬套件由這些套件提供: libc6-udeb
  • dep: libgcc-s1 (>= 3.0)
    GCC support library
  • dep: libstdc++6 (>= 9)
    GNU Standard C++ Library v3
  • enh: t-coffee
    Multiple Sequence Alignment

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下載可用於所有硬體架構的
硬體架構 套件大小 安裝後大小 檔案
amd64 382.2 kB1161 kB [文件列表]