套件: jellyfish1 (1.1.11-4build1)
jellyfish1 的相關超連結
Trisquel 的資源:
下載原始碼套件 jellyfish1:
- [jellyfish1_1.1.11-4build1.dsc]
- [jellyfish1_1.1.11.orig.tar.gz]
- [jellyfish1_1.1.11-4build1.debian.tar.xz]
維護者:
Original Maintainers:
- Debian Med Packaging Team (郵件存檔)
- Shaun Jackman
- Andreas Tille
外部的資源:
- 主頁 [www.cbcb.umd.edu]
相似套件:
count k-mers in DNA sequences
JELLYFISH is a tool for fast, memory-efficient counting of k-mers in DNA. A k-mer is a substring of length k, and counting the occurrences of all such substrings is a central step in many analyses of DNA sequence. JELLYFISH can count k-mers using an order of magnitude less memory and an order of magnitude faster than other k-mer counting packages by using an efficient encoding of a hash table and by exploiting the "compare-and-swap" CPU instruction to increase parallelism.
JELLYFISH is a command-line program that reads FASTA and multi-FASTA files containing DNA sequences. It outputs its k-mer counts in an binary format, which can be translated into a human-readable text format using the "jellyfish dump" command.
This is the latest version of the 1.x series of jellyfish which is used by some other applications that are not compatible with version 2.x which is provided inside the jellyfish package.
其他與 jellyfish1 有關的套件
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- dep: libc6 (>= 2.14)
- GNU C Library: Shared libraries
同時作為一個虛擬套件由這些套件提供: libc6-udeb
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- dep: libgcc-s1 (>= 3.0)
- GCC support library
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- dep: libstdc++6 (>= 9)
- GNU Standard C++ Library v3
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- enh: kraken
- assigning taxonomic labels to short DNA sequences