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[ 原始碼： kleborate  ]

套件： kleborate (1.0.0-3)

kleborate 的相關超連結

kleborate

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下載原始碼套件 kleborate：

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相似套件：

tool to screen Klebsiella genome assemblies

Kleborate is a tool to screen Klebsiella genome assemblies for: 

 * MLST sequence type
 * species (e.g. K. pneumoniae, K. quasipneumoniae, K. variicola, etc.)
 * ICEKp associated virulence loci: yersiniabactin (ybt),
   colibactin (clb)
 * virulence plasmid associated loci: salmochelin (iro), aerobactin
   (iuc), hypermucoidy (rmpA, rmpA2)
 * antimicrobial resistance genes, including quinolone resistance SNPs
   and colistin resistance truncations
 * K (capsule) and O antigen (LPS) serotype prediction, via wzi alleles
   and Kaptive

其他與 kleborate 有關的套件

  • 依賴
  • 推薦
  • 建議
  • dep: kaptive
    obtain information about K and O types for Klebsiella genome assemblies
  • dep: kaptive-data
    reference data for kaptive for Klebsiella genome assemblies
  • dep: mash
    fast genome and metagenome distance estimation using MinHash
  • dep: ncbi-blast+
    next generation suite of BLAST sequence search tools
  • dep: python3
    interactive high-level object-oriented language (default python3 version)
  • dep: python3-distutils
    distutils package for Python 3.x

下載 kleborate

下載可用於所有硬體架構的
硬體架構 套件大小 安裝後大小 檔案
amd64 4,944.3 kB35500 kB [文件列表]