套件： salmon (0.12.0+ds1-1)
salmon 的相關超連結
Trisquel 的資源：
下載原始碼套件 salmon：
維護者：
Original Maintainers:
- Debian Med Packaging Team (郵件存檔)
- Michael R. Crusoe
- Kevin Murray
外部的資源：
- 主頁 [github.com]
相似套件：
wicked-fast transcript quantification from RNA-seq data
Salmon is a wicked-fast program to produce a highly-accurate, transcript-level quantification estimates from RNA-seq data. Salmon achieves is accuracy and speed via a number of different innovations, including the use of lightweight alignments (accurate but fast-to-compute proxies for traditional read alignments) and massively-parallel stochastic collapsed variational inference. The result is a versatile tool that fits nicely into many different pipelines. For example, you can choose to make use of the lightweight alignments by providing Salmon with raw sequencing reads, or, if it is more convenient, you can provide Salmon with regular alignments (e.g. computed with your favorite aligner), and it will use the same wicked-fast, state-of-the-art inference algorithm to estimate transcript-level abundances for your experiment.
其他與 salmon 有關的套件
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- dep: libboost-filesystem1.67.0
- filesystem operations (portable paths, iteration over directories, etc) in C++
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- dep: libboost-iostreams1.67.0
- Boost.Iostreams Library
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- dep: libboost-program-options1.67.0
- program options library for C++
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- dep: libboost-system1.67.0
- Operating system (e.g. diagnostics support) library
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- dep: libc6 (>= 2.14)
- GNU C Library: Shared libraries
同時作為一個虛擬套件由這些套件提供： libc6-udeb
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- dep: libdivsufsort3 (>= 2.0.1)
- fast suffix array construction
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- dep: libgcc1 (>= 1:3.4)
- GCC support library (dependency package)
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- dep: libjemalloc2 (>= 5.0.0)
- general-purpose scalable concurrent malloc(3) implementation
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- dep: libjs-sphinxdoc (>= 1.0)
- JavaScript support for Sphinx documentation
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- dep: libstaden-read13
- Staden library for reading and writing DNA sequencing results
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- dep: libstdc++6 (>= 7)
- GNU Standard C++ Library v3
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- dep: libtbb2 (>= 2017~U7)
- parallelism library for C++ - runtime files
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- dep: sphinx-rtd-theme-common (>= 0.4.2+dfsg)
- sphinx theme from readthedocs.org (common files)
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- dep: zlib1g (>= 1:1.1.4)
- compression library - runtime