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[ 原始碼: tvc  ]

套件: tvc (5.0.3+git20151221.80e144e+dfsg-3)

genetic variant caller for Ion Torrent sequencing platforms

Torrent Variant Caller (TVC) is a genetic variant caller for Ion Torrent sequencing platforms, and is specially optimized to exploit the underlying flow signal information in the statistical model to evaluate variants. Torrent Variant Caller is designed to call single-nucleotide polymorphisms (SNPs), multi-nucleotide polymorphisms (MNPs), insertions, deletions, and block substitutions.

其他與 tvc 有關的套件

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  • 建議
  • dep: libarmadillo9 (>= 1:9.800.4+dfsg)
    streamlined C++ linear algebra library
  • dep: libbamtools2.5.1 (>= 2.5.1+dfsg)
    dynamic library for manipulating BAM (genome alignment) files
  • dep: libc6 (>= 2.29)
    GNU C Library: Shared libraries
    同時作為一個虛擬套件由這些套件提供: libc6-udeb
  • dep: libdisorder0 (>= 0.0.2)
    library for entropy measurement of byte streams
  • dep: libgcc-s1 (>= 3.0)
    GCC support library
  • dep: libjsoncpp1 (>= 1.7.4)
    library for reading and writing JSON for C++
  • dep: libsmithwaterman0 (>= 0.0+git20160702.2610e25)
    determine similar regions between two strings or genomic sequences (lib)
  • dep: libstdc++6 (>= 9)
    GNU Standard C++ Library v3
  • dep: python3
    interactive high-level object-oriented language (default python3 version)
  • dep: zlib1g (>= 1:1.1.4)
    compression library - runtime

下載 tvc

下載可用於所有硬體架構的
硬體架構 套件大小 安裝後大小 檔案
amd64 1,062.0 kB3452 kB [文件列表]