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[ 原始碼: python-freecontact  ]

套件: python3-freecontact (1.1-5build2)

python3-freecontact 的相關超連結

python3-freecontact

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下載原始碼套件 python-freecontact

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Original Maintainers:

  • Debian Med Packaging Team (郵件存檔)
  • Laszlo Kajan
  • Andreas Tille
  • Alexandre Mestiashvili

外部的資源:

相似套件:

fast protein contact predictor - binding for Python3

FreeContact is a protein residue contact predictor optimized for speed. Its input is a multiple sequence alignment. FreeContact can function as an accelerated drop-in for the published contact predictors EVfold-mfDCA of DS. Marks (2011) and PSICOV of D. Jones (2011).

FreeContact is accelerated by a combination of vector instructions, multiple threads, and faster implementation of key parts. Depending on the alignment, 8-fold or higher speedups are possible.

A sufficiently large alignment is required for meaningful results. As a minimum, an alignment with an effective (after-weighting) sequence count bigger than the length of the query sequence should be used. Alignments with tens of thousands of (effective) sequences are considered good input.

jackhmmer(1) from the hmmer package, or hhblits(1) from hhsuite can be used to generate the alignments, for example.

This package contains the Python3 binding.

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下載可用於所有硬體架構的
硬體架構 套件大小 安裝後大小 檔案
amd64 70.8 kB251 kB [文件列表]
armhf 66.7 kB213 kB [文件列表]