原始碼套件： roary (3.13.0+dfsg-1)
roary 的相關超連結
Trisquel 的資源：
維護者：
Original Maintainers:
- Debian Med Packaging Team (郵件存檔)
- Sascha Steinbiss
外部的資源：
- 主頁 [sanger-pathogens.github.io]
本原始碼套件構建了以下這些二進制套件：
- roary
- high speed stand alone pan genome pipeline
其他與 roary 有關的套件
|
|
-
- adep: debhelper (>= 12~)
- helper programs for debian/rules
-
- adep: dh-dist-zilla
- debhelper add-on to call dzil build and clean up after the build
-
- adep: libdist-zilla-plugin-podweaver-perl
- Dist::Zilla plugin to use Pod::Weaver to generate Pod documentation
-
- adep: bioperl (>= 1.7.4)
- Perl tools for computational molecular biology
-
- adep: libarray-utils-perl
- collection of small utils for array manipulation
-
- adep: libenv-path-perl
- Perl module implementing advanced operations on path variables
-
- adep: libexception-class-perl
- module that allows you to declare real exception classes in Perl
-
- adep: libfile-find-rule-perl
- module to search for files based on rules
-
- adep: libfile-grep-perl
- module for pattern matching in a series of files
-
- adep: libfile-slurper-perl
- simple, sane and efficient module to slurp a file
-
- adep: libfile-which-perl
- Perl module for searching paths for executable programs
-
- adep: libfindbin-libs-perl
- Perl module to use a relative path for lib directories
-
- adep: libgraph-perl
- Perl module for graph data structures and algorithms
-
- adep: libgraph-readwrite-perl
- module for reading and writing directed graphs
-
- adep: liblog-log4perl-perl
- Perl port of the widely popular log4j logging package
-
- adep: libmoose-perl
- modern Perl object system framework
-
- adep: libperlio-utf8-strict-perl
- fast and correct UTF-8 Perl IO module
-
- adep: libtest-most-perl
- Perl module with the most commonly needed test functions and features
-
- adep: libtest-file-perl
- Perl module to test file attributes
-
- adep: libtest-files-perl
- module to ease testing with files and directories
-
- adep: libtest-output-perl
- perl module to test stdout and stderr messages
-
- adep: libtext-csv-perl
- comma-separated values manipulator (using XS or PurePerl)
-
- adep: bedtools
- suite of utilities for comparing genomic features
-
- adep: cd-hit
- suite of programs designed to quickly group sequences
-
- adep: ncbi-blast+
- next generation suite of BLAST sequence search tools
-
- adep: mcl
- Markov Cluster algorithm
-
- adep: parallel
- build and execute command lines from standard input in parallel
-
- adep: prank
- Probabilistic Alignment Kit for DNA, codon and amino-acid sequences
-
- adep: r-base-core
- GNU R core of statistical computation and graphics system
-
- adep: mafft
- Multiple alignment program for amino acid or nucleotide sequences
-
- adep: fasttree
- phylogenetic trees from alignments of nucleotide or protein sequences
-
- idep: perl
- Larry Wall's Practical Extraction and Report Language
Download roary
| 文件 | 大小(單位: kB) | MD5 檢查碼 |
|---|---|---|
| roary_3.13.0+dfsg-1.dsc | 2.4 kB | 77434b6bcc70e1949a357c943523fb20 |
| roary_3.13.0+dfsg.orig.tar.xz | 202.5 kB | fe3935332843c9d4dfb4d4c5cb9080a6 |
| roary_3.13.0+dfsg-1.debian.tar.xz | 6.5 kB | 5e189111d062819d48d66eff830c7c36 |
- Debian 套件原始碼倉庫(VCS: Git)
- https://salsa.debian.org/med-team/roary.git
- Debian 套件原始碼倉庫(可在線瀏覽)
- https://salsa.debian.org/med-team/roary