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Package: pal2nal (14.1-3)

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pal2nal

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Download Source Package pal2nal:

Maintainer:

Original Maintainers:

  • Debian Med Packaging Team (Mail Archive)
  • Pjotr Prins
  • Steffen Moeller

External Resources:

Similar packages:

converts proteins to genomic DNA alignment

PAL2NAL is a program that converts a multiple sequence alignment of proteins and the corresponding DNA (or mRNA) sequences into a codon-based DNA alignment. The program automatically assigns the corresponding codon sequence even if the input DNA sequence has mismatches with the input protein sequence, or contains UTRs, polyA tails. It can also deal with frame shifts in the input alignment, which is suitable for the analysis of pseudogenes. The resulting codon-based DNA alignment can further be subjected to the calculation of synonymous (Ks) and non-synonymous (Ka) substitution rates.

Other Packages Related to pal2nal

  • depends
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  • rec: paml
    Phylogenetic Analysis by Maximum Likelihood (PAML)

Download pal2nal

Download for all available architectures
Architecture Package Size Installed Size Files
all 17.4 kB91 kB [list of files]