[ aramo ]
[ Източник: r-bioc-grohmm ]
Пакет: r-bioc-grohmm (1.28.0-1)
Връзки за r-bioc-grohmm
Ресурси за Trisquel:
Изтегляне на пакет-източник r-bioc-grohmm.
- [r-bioc-grohmm_1.28.0-1.dsc]
- [r-bioc-grohmm_1.28.0.orig.tar.gz]
- [r-bioc-grohmm_1.28.0-1.debian.tar.xz]
Отговорник:
Original Maintainers:
- Debian R Packages Maintainers
- Steffen Moeller
Външни препратки:
- Начална страница [bioconductor.org]
Подобни пакети:
GRO-seq Analysis Pipeline
This BioConductor package provides a pipeline for the analysis of GRO- seq data. Among the more advanced features, r-bioc-grohmm predicts the boundaries of transcriptional activity across the genome de novo using a two-state hidden Markov model (HMM).
The used model essentially divides the genome into transcribed and non- transcribed regions in a strand specific manner. HMMs are used to identify the leading edge of Pol II at genes activated by a stimulus in GRO-seq time course data. This approach allows the genome-wide interrogation of transcription rates in cells.
Други пакети, свързани с r-bioc-grohmm
|
|
|
-
- dep: libc6 (>= 2.17)
- GNU C Library: Shared libraries
също и виртуален пакет, предлаган от libc6-udeb
-
- dep: r-api-4.0
- виртуален пакет, предлаган от r-base-core
-
- dep: r-api-bioc-3.14
- виртуален пакет, предлаган от r-bioc-biocgenerics
-
- dep: r-base-core (>= 4.1.2-1ubuntu1)
- GNU R core of statistical computation and graphics system
-
- dep: r-bioc-genomeinfodb
- BioConductor utilities for manipulating chromosome identifiers
-
- dep: r-bioc-genomicalignments (>= 1.15.6)
- BioConductor representation and manipulation of short genomic alignments
-
- dep: r-bioc-genomicranges (>= 1.31.8)
- BioConductor representation and manipulation of genomic intervals
-
- dep: r-bioc-iranges (>= 2.13.12)
- GNU R low-level containers for storing sets of integer ranges
-
- dep: r-bioc-rtracklayer (>= 1.39.7)
- GNU R interface to genome browsers and their annotation tracks
-
- dep: r-bioc-s4vectors (>= 0.17.25)
- BioConductor S4 implementation of vectors and lists
-
- dep: r-cran-mass
- GNU R package of Venables and Ripley's MASS
-
- sug: r-bioc-biocstyle
- standard styles for vignettes and other Bioconductor documents
-
- sug: r-bioc-edger
- Empirical analysis of digital gene expression data in R
-
- sug: r-bioc-genomicfeatures
- GNU R tools for making and manipulating transcript centric annotations
-
- sug: r-bioc-org.hs.eg.db
- genome-wide annotation for Human
Изтегляне на r-bioc-grohmm
| Архитектура | Големина на пакета | Големина след инсталиране | Файлове |
|---|---|---|---|
| arm64 | 4 331,9 кБ | 4492 кБ | [списък на файловете] |