Пакет: metaphlan2-data (2.6.0+ds-3)
Връзки за metaphlan2-data
Ресурси за Trisquel:
Изтегляне на пакет-източник metaphlan2-data.
- [metaphlan2-data_2.6.0+ds-3.dsc]
- [metaphlan2-data_2.6.0+ds.orig.tar.xz]
- [metaphlan2-data_2.6.0+ds-3.debian.tar.xz]
Отговорник:
Original Maintainers:
- Debian Med Packaging Team (Пощенски архив)
- Andreas Tille
Външни препратки:
- Начална страница [bitbucket.org]
Подобни пакети:
data package for Metagenomic Phylogenetic Analysis
MetaPhlAn is a computational tool for profiling the composition of microbial communities (Bacteria, Archaea, Eukaryotes and Viruses) from metagenomic shotgun sequencing data with species level resolution. From version 2.0, MetaPhlAn is also able to identify specific strains (in the not-so-frequent cases in which the sample contains a previously sequenced strains) and to track strains across samples for all species.
MetaPhlAn 2.0 relies on ~1M unique clade-specific marker genes (the marker information file can be found at src/utils/markers_info.txt.bz2 or here) identified from ~17,000 reference genomes (~13,500 bacterial and archaeal, ~3,500 viral, and ~110 eukaryotic), allowing:
* unambiguous taxonomic assignments; * accurate estimation of organismal relative abundance; * species-level resolution for bacteria, archaea, eukaryotes and viruses; * strain identification and tracking * orders of magnitude speedups compared to existing methods. * metagenomic strain-level population genomics
This package contains the data for metaphlan2.
Други пакети, свързани с metaphlan2-data
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-
- dep: bowtie2
- ultrafast memory-efficient short read aligner
-
- dep: debconf (>= 0.5)
- Debian configuration management system
- или debconf-2.0
- виртуален пакет, предлаган от cdebconf, cdebconf-udeb, debconf
Изтегляне на metaphlan2-data
Архитектура | Големина на пакета | Големина след инсталиране | Файлове |
---|---|---|---|
all | 199 538,8 кБ | 753106 кБ | [списък на файловете] |