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Paketti: discosnp (1:2.6.2-1)

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discosnp

Trisquel-palvelut:

Imuroi lähdekoodipaketti discosnp:

Ylläpitäjä:

Original Maintainers:

  • Debian Med Packaging Team (Mail Archive)
  • Olivier Sallou
  • Andreas Tille

External Resources:

Samankaltaisia paketteja:

discovering Single Nucleotide Polymorphism from raw set(s) of reads

Software discoSnp is designed for discovering Single Nucleotide Polymorphism (SNP) from raw set(s) of reads obtained with Next Generation Sequencers (NGS).

Note that number of input read sets is not constrained, it can be one, two, or more. Note also that no other data as reference genome or annotations are needed.

The software is composed by two modules. First module, kissnp2, detects SNPs from read sets. A second module, kissreads, enhance the kissnp2 results by computing per read set and for each found SNP: 

 1) its mean read coverage
 2) the (phred) quality of reads generating the polymorphism.

This program is superseded by DiscoSnp++.

Muut pakettiin discosnp liittyvät paketit

  • depends
  • recommends
  • suggests
  • dep: gatb-core
    Genome Analysis Toolbox with de-Bruijn graph
  • dep: libc6 (>= 2.34)
    GNU C Library: Shared libraries
    myös näennäispaketti, jonka toteuttaa libc6-udeb
  • dep: libgatbcore3 (>= 1.4.2+dfsg)
    dynamic library of the Genome Analysis Toolbox
  • dep: libgcc-s1 (>= 3.3.1)
    GCC support library
  • dep: libhdf5-103-1
    HDF5 C runtime files - serial version
  • dep: libstdc++6 (>= 11)
    GNU Standard C++ Library v3
  • dep: python3
    interactive high-level object-oriented language (default python3 version)
  • dep: zlib1g (>= 1:1.2.6)
    compression library - runtime

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