[ Source: r-bioc-genomicalignments ]
Paketti: r-bioc-genomicalignments (1.14.1-1)
Links for r-bioc-genomicalignments
Trisquel-palvelut:
Imuroi lähdekoodipaketti r-bioc-genomicalignments:
- [r-bioc-genomicalignments_1.14.1-1.dsc]
- [r-bioc-genomicalignments_1.14.1.orig.tar.gz]
- [r-bioc-genomicalignments_1.14.1-1.debian.tar.xz]
Ylläpitäjä:
Original Maintainers:
- Debian Med Packaging Team (Mail Archive)
- Andreas Tille
External Resources:
- Kotisivu [bioconductor.org]
Samankaltaisia paketteja:
BioConductor representation and manipulation of short genomic alignments
This BioConductor package provides efficient containers for storing and manipulating short genomic alignments (typically obtained by aligning short reads to a reference genome). This includes read counting, computing the coverage, junction detection, and working with the nucleotide content of the alignments.
Muut pakettiin r-bioc-genomicalignments liittyvät paketit
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- dep: libc6 (>= 2.4)
- GNU C Library: Shared libraries
myös näennäispaketti, jonka toteuttaa libc6-udeb
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- dep: r-api-3.4
- näennäispaketti, jonka toteuttaa r-base-core
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- dep: r-base-core (>= 3.4.3-1build1)
- GNU R core of statistical computation and graphics system
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- dep: r-bioc-biocgenerics (>= 0.15.3)
- generic functions for Bioconductor
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- dep: r-bioc-biocparallel
- BioConductor facilities for parallel evaluation
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- dep: r-bioc-biostrings (>= 2.37.1)
- GNU R string objects representing biological sequences
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- dep: r-bioc-genomeinfodb (>= 1.13.1)
- BioConductor utilities for manipulating chromosome identifiers
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- dep: r-bioc-genomicranges (>= 1.29.14)
- BioConductor representation and manipulation of genomic intervals
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- dep: r-bioc-iranges (>= 2.11.16)
- GNU R low-level containers for storing sets of integer ranges
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- dep: r-bioc-rsamtools (>= 1.21.4)
- GNU R binary alignment (BAM), variant call (BCF), or tabix file import
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- dep: r-bioc-s4vectors (>= 0.13.13)
- BioConductor S4 implementation of vectors and lists
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- dep: r-bioc-summarizedexperiment (>= 1.5.3)
- BioConductor assay container
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- sug: r-bioc-bsgenome
- BioConductor infrastructure for Biostrings-based genome data packages
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- sug: r-bioc-deseq2
- R package for RNA-Seq Differential Expression Analysis
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- sug: r-bioc-genomicfeatures
- GNU R tools for making and manipulating transcript centric annotations
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- sug: r-bioc-rtracklayer
- GNU R interface to genome browsers and their annotation tracks
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- sug: r-bioc-shortread
- GNU R classes and methods for high-throughput short-read sequencing data
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- sug: r-cran-runit
- GNU R package providing unit testing framework
Imuroi r-bioc-genomicalignments
| Arkkitehtuuri | Paketin koko | Koko asennettuna | Tiedostot |
|---|---|---|---|
| amd64 | 1,657.4 kt | 2200 kt | [tiedostoluettelo] |
| i386 | 1,652.6 kt | 2190 kt | [tiedostoluettelo] |