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Пакет: r-bioc-genomicalignments (1.14.1-1)

BioConductor representation and manipulation of short genomic alignments

This BioConductor package provides efficient containers for storing and manipulating short genomic alignments (typically obtained by aligning short reads to a reference genome). This includes read counting, computing the coverage, junction detection, and working with the nucleotide content of the alignments.

Другие пакеты, относящиеся к r-bioc-genomicalignments

  • зависимости
  • рекомендации
  • предложения
  • dep: libc6 (>= 2.4)
    GNU C Library: Shared libraries
    также виртуальный пакет, предоставляемый libc6-udeb
  • dep: r-api-3.4
    виртуальный пакет, предоставляемый r-base-core
  • dep: r-base-core (>= 3.4.3-1build1)
    GNU R core of statistical computation and graphics system
  • dep: r-bioc-biocgenerics (>= 0.15.3)
    generic functions for Bioconductor
  • dep: r-bioc-biocparallel
    BioConductor facilities for parallel evaluation
  • dep: r-bioc-biostrings (>= 2.37.1)
    GNU R string objects representing biological sequences
  • dep: r-bioc-genomeinfodb (>= 1.13.1)
    BioConductor utilities for manipulating chromosome identifiers
  • dep: r-bioc-genomicranges (>= 1.29.14)
    BioConductor representation and manipulation of genomic intervals
  • dep: r-bioc-iranges (>= 2.11.16)
    GNU R low-level containers for storing sets of integer ranges
  • dep: r-bioc-rsamtools (>= 1.21.4)
    GNU R binary alignment (BAM), variant call (BCF), or tabix file import
  • dep: r-bioc-s4vectors (>= 0.13.13)
    BioConductor S4 implementation of vectors and lists
  • dep: r-bioc-summarizedexperiment (>= 1.5.3)
    BioConductor assay container
  • sug: r-bioc-bsgenome
    BioConductor infrastructure for Biostrings-based genome data packages
  • sug: r-bioc-deseq2
    R package for RNA-Seq Differential Expression Analysis
  • sug: r-bioc-genomicfeatures
    GNU R tools for making and manipulating transcript centric annotations
  • sug: r-bioc-rtracklayer
    GNU R interface to genome browsers and their annotation tracks
  • sug: r-bioc-shortread
    GNU R classes and methods for high-throughput short-read sequencing data
  • sug: r-cran-runit
    GNU R package providing unit testing framework

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