Paketti: hisat2 (2.1.0-4)
Links for hisat2
Trisquel-palvelut:
Imuroi lähdekoodipaketti hisat2:
Ylläpitäjä:
Original Maintainers:
- Debian Med Packaging Team (Mail Archive)
- Michael R. Crusoe
External Resources:
- Kotisivu [ccb.jhu.edu]
Samankaltaisia paketteja:
graph-based alignment of short nucleotide reads to many genomes
HISAT2 is a fast and sensitive alignment program for mapping next-generation sequencing reads (both DNA and RNA) to a population of human genomes (as well as against a single reference genome). Based on an extension of BWT for graphs a graph FM index (GFM) was designed and implementd. In addition to using one global GFM index that represents a population of human genomes, HISAT2 uses a large set of small GFM indexes that collectively cover the whole genome (each index representing a genomic region of 56 Kbp, with 55,000 indexes needed to cover the human population). These small indexes (called local indexes), combined with several alignment strategies, enable rapid and accurate alignment of sequencing reads. This new indexing scheme is called a Hierarchical Graph FM index (HGFM).
Muut pakettiin hisat2 liittyvät paketit
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- dep: libc6 (>= 2.29)
- GNU C Library: Shared libraries
myös näennäispaketti, jonka toteuttaa libc6-udeb
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- dep: libgcc-s1 (>= 3.0) [amd64]
- GCC support library
- dep: libgcc-s1 (>= 3.5) [armhf]
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- dep: libstdc++6 (>= 9)
- GNU Standard C++ Library v3
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- dep: perl
- Larry Wall's Practical Extraction and Report Language
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- dep: python3
- interactive high-level object-oriented language (default python3 version)
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- rec: bcftools
- genomic variant calling and manipulation of VCF/BCF files
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- rec: python3-hisat2
- Python scripts accompanying hisat2
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- rec: samtools
- processing sequence alignments in SAM, BAM and CRAM formats
Imuroi hisat2
| Arkkitehtuuri | Paketin koko | Koko asennettuna | Tiedostot |
|---|---|---|---|
| amd64 | 3,301.8 kt | 13400 kt | [tiedostoluettelo] |
| armhf | 3,092.6 kt | 11238 kt | [tiedostoluettelo] |