Paquet : shasta (0.8.0-2ubuntu1)
Liens pour shasta
Ressources Trisquel :
Télécharger le paquet source shasta :
Responsable :
Original Maintainers:
- Debian Med Packaging Team (Archive du courrier électronique)
- Shayan Doust
Ressources externes :
- Page d'accueil [github.com]
Paquets similaires :
nanopore whole genome assembly (binaries and scripts)
De novo assembly from Oxford Nanopore reads. The goal of the Shasta long read assembler is to rapidly produce accurate assembled sequence using as input DNA reads generated by Oxford Nanopore flow cells.
Computational methods used by the Shasta assembler include:
* Using a run-length representation of the read sequence. This makes the assembly process more resilient to errors in homopolymer repeat counts, which are the most common type of errors in Oxford Nanopore reads.
* Using in some phases of the computation a representation of the read sequence based on markers, a fixed subset of short k-mers (k ≈ 10).
Shasta assembly quality is comparable or better than assembly quality achieved by other long read assemblers.
This package contains the executable binaries (tools) and accommodating scripts.
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Télécharger shasta
Architecture | Taille du paquet | Espace occupé une fois installé | Fichiers |
---|---|---|---|
arm64 | 627,7 ko | 2659 ko | [liste des fichiers] |