Пакет: shasta (0.8.0-2ubuntu1)
Ссылки для shasta
Ресурсы Trisquel:
Исходный код shasta:
Сопровождающий:
Original Maintainers:
- Debian Med Packaging Team (Почтовый архив)
- Shayan Doust
Внешние ресурсы:
- Сайт [github.com]
Подобные пакеты:
nanopore whole genome assembly (binaries and scripts)
De novo assembly from Oxford Nanopore reads. The goal of the Shasta long read assembler is to rapidly produce accurate assembled sequence using as input DNA reads generated by Oxford Nanopore flow cells.
Computational methods used by the Shasta assembler include:
* Using a run-length representation of the read sequence. This makes the assembly process more resilient to errors in homopolymer repeat counts, which are the most common type of errors in Oxford Nanopore reads.
* Using in some phases of the computation a representation of the read sequence based on markers, a fixed subset of short k-mers (k ≈ 10).
Shasta assembly quality is comparable or better than assembly quality achieved by other long read assemblers.
This package contains the executable binaries (tools) and accommodating scripts.
Другие пакеты, относящиеся к shasta
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- dep: libboost-chrono1.74.0 (>= 1.74.0)
- C++ representation of time duration, time point, and clocks
-
- dep: libboost-program-options1.74.0 (>= 1.74.0)
- program options library for C++
-
- dep: libc6 (>= 2.34)
- GNU C Library: Shared libraries
также виртуальный пакет, предоставляемый libc6-udeb
-
- dep: libgcc-s1 (>= 3.0)
- GCC support library
-
- dep: libstdc++6 (>= 11)
- GNU Standard C++ Library v3
-
- dep: python3-shasta (= 0.8.0-2ubuntu1)
- nanopore whole genome assembly (dynamic library)
Загрузка shasta
Архитектура | Размер пакета | В установленном виде | Файлы |
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arm64 | 627,7 Кб | 2659 Кб | [список файлов] |