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Paquet : bali-phy (3.6.1+dfsg-1)

Bayesian Inference of Alignment and Phylogeny

BAli-Phy estimates multiple sequence alignments and evolutionary trees from unaligned DNA, amino acid, or codon sequences. BAli-Phy uses MCMC to estimate evolutionary trees, positive selection, and branch lengths while averaging over alternative alignments. BAli-Phy can display alignment ambiguity graphically in an alignment uncertainty (AU) plot.

BAli-Phy can also estimate phylogenies from a fixed alignment (like MrBayes and BEAST) using substitution models like GTR+gamma. BAli-Phy automatically estimates relative rates for each gene.

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  • dep: libboost-random1.74.0 (>= 1.74.0)
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  • dep: libc6 (>= 2.34)
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  • dep: libcairo2 (>= 1.4.10)
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  • dep: libgcc-s1 (>= 3.4) [amd64]
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    dep: libgcc-s1 (>= 3.5) [armhf]
    dep: libgcc-s1 (>= 4.2) [ppc64el]
    dep: libgcc-s1 (>= 4.5) [arm64]
  • dep: libstdc++6 (>= 11)
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  • dep: perl
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  • sug: figtree
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Télécharger pour toutes les architectures proposées
Architecture Taille du paquet Espace occupé une fois installé Fichiers
amd64 5 228,3 ko20833 ko [liste des fichiers]
arm64 5 187,3 ko18645 ko [liste des fichiers]
armhf 5 008,6 ko22163 ko [liste des fichiers]
ppc64el 5 857,9 ko23855 ko [liste des fichiers]