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Paket: bali-phy (3.6.1+dfsg-1)

Bayesian Inference of Alignment and Phylogeny

BAli-Phy estimates multiple sequence alignments and evolutionary trees from unaligned DNA, amino acid, or codon sequences. BAli-Phy uses MCMC to estimate evolutionary trees, positive selection, and branch lengths while averaging over alternative alignments. BAli-Phy can display alignment ambiguity graphically in an alignment uncertainty (AU) plot.

BAli-Phy can also estimate phylogenies from a fixed alignment (like MrBayes and BEAST) using substitution models like GTR+gamma. BAli-Phy automatically estimates relative rates for each gene.

Andra paket besläktade med bali-phy

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  • rekommenderar
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  • dep: libboost-chrono1.74.0 (>= 1.74.0)
    C++ representation of time duration, time point, and clocks
  • dep: libboost-filesystem1.74.0 (>= 1.74.0)
    filesystem operations (portable paths, iteration over directories, etc) in C++
  • dep: libboost-program-options1.74.0 (>= 1.74.0)
    program options library for C++
  • dep: libboost-random1.74.0 (>= 1.74.0)
    Boost Random Number Library
  • dep: libc6 (>= 2.34)
    GNU C Library: Shared libraries
    också ett virtuellt paket som tillhandahålls av libc6-udeb
  • dep: libcairo2 (>= 1.4.10)
    Cairo 2D vector graphics library
  • dep: libgcc-s1 (>= 3.4) [amd64]
    GCC support library
    dep: libgcc-s1 (>= 3.5) [armhf]
    dep: libgcc-s1 (>= 4.2) [ppc64el]
    dep: libgcc-s1 (>= 4.5) [arm64]
  • dep: libstdc++6 (>= 11)
    GNU Standard C++ Library v3
  • dep: perl
    Larry Wall's Practical Extraction and Report Language
  • dep: python3
    interactive high-level object-oriented language (default python3 version)
  • sug: figtree
    graphical phylogenetic tree viewer
  • sug: seaview
    Paketet inte tillgängligt

Hämta bali-phy

Hämtningar för alla tillgängliga arkitekturer
Arkitektur Paketstorlek Installerad storlek Filer
amd64 5.228,3 kbyte20833 kbyte [filförteckning]
arm64 5.187,3 kbyte18645 kbyte [filförteckning]
armhf 5.008,6 kbyte22163 kbyte [filförteckning]
ppc64el 5.857,9 kbyte23855 kbyte [filförteckning]