Paquet : physamp (1.1.0-1)

Liens pour physamp

Ressources Trisquel :

Télécharger le paquet source physamp :

Responsable :

Debian Med Packaging Team (Archive du courrier électronique)

Original Maintainers:

Debian Med Packaging Team (Archive du courrier électronique)
Andreas Tille
Julien Dutheil

Ressources externes :

Page d'accueil [jydu.github.io]

Paquets similaires :

sample sequence alignment corresponding to phylogeny

The PhySamp package currently contains two programs: bppphysamp, which samples sequences according to their similarity, and bppalnoptim, which samples a sequence alignment by removing sequences in order to maximize the number of sites suitable for a given analysis. The bppalnoptim program has three running modes:

 * Interactive: the user will be iteratively proposed a set of choices
   for sequence removal, with their corresponding site gains. The
   procedure stops when the user does not want to remove more sequences,
   and the resulting filtered alignment is written.
 * Automatic: the user enters an a priori criterion for stopping
   the filtering procedure (for instance a minimum number of
   sequences to keep).
 * Diagnostic: this mode allows one to plot the trade-off curve, by
   showing the site gain as a function of the number of removed
   sequences.

Autres paquets associés à physamp

dépendances

recommandations

suggestions

dep: libbpp-core4 (>= 2.4.0)

Bio++ Core library
dep: libbpp-phyl12 (>= 2.4.0)

Bio++ Phylogenetic library
dep: libbpp-seq12 (>= 2.4.0)

Bio++ Sequence library
dep: libc6 (>= 2.14)

GNU C Library: Shared libraries
un paquet virtuel est également fourni par libc6-udeb
dep: libgcc1 (>= 1:3.0)

GCC support library
dep: libstdc++6 (>= 5.2)

GNU Standard C++ Library v3

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Architecture	Taille du paquet	Espace occupé une fois installé	Fichiers
amd64	264,8 ko	465 ko	[liste des fichiers]

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