Skip to content
Sections
>> Trisquel >> Balíky >> etiona >> science >> physamp
etiona  ] [  nabia  ] [  aramo  ]
[ Zdroj: physamp  ]

Balík: physamp (1.1.0-1)

Odkazy pre physamp

physamp

Zdroje Trisquel:

Stiahnuť zdrojový balík physamp:

Správca:

Original Maintainers:

  • Debian Med Packaging Team (Konferencia)
  • Andreas Tille
  • Julien Dutheil

Externé zdroje:

Podobné balíky:

sample sequence alignment corresponding to phylogeny

The PhySamp package currently contains two programs: bppphysamp, which samples sequences according to their similarity, and bppalnoptim, which samples a sequence alignment by removing sequences in order to maximize the number of sites suitable for a given analysis. The bppalnoptim program has three running modes:

 * Interactive: the user will be iteratively proposed a set of choices
   for sequence removal, with their corresponding site gains. The
   procedure stops when the user does not want to remove more sequences,
   and the resulting filtered alignment is written.
 * Automatic: the user enters an a priori criterion for stopping
   the filtering procedure (for instance a minimum number of
   sequences to keep).
 * Diagnostic: this mode allows one to plot the trade-off curve, by
   showing the site gain as a function of the number of removed
   sequences.

Ostatné balíky súvisiace s balíkom physamp

  • závisí
  • odporúča
  • navrhuje
  • dep: libbpp-core4 (>= 2.4.0)
    Bio++ Core library
  • dep: libbpp-phyl12 (>= 2.4.0)
    Bio++ Phylogenetic library
  • dep: libbpp-seq12 (>= 2.4.0)
    Bio++ Sequence library
  • dep: libc6 (>= 2.14)
    GNU C Library: Shared libraries
    tiež virtuálny balík poskytovaný balíkom libc6-udeb
  • dep: libgcc1 (>= 1:3.0)
    GCC support library
  • dep: libstdc++6 (>= 5.2)
    GNU Standard C++ Library v3

Stiahnuť physamp

Stiahnuť pre všetky dostupné architektúry
Architektúra Veľkosť balíka Nainštalovaná veľkosť Súbory
amd64 264.8 kB465 kB [zoznam súborov]