[ Source: bioperl-run ]
Package: bioperl-run (1.7.3-8)
Links for bioperl-run
Trisquel Resources:
Download Source Package bioperl-run:
Maintainer:
Original Maintainers:
- Debian Med Packaging Team (Mail Archive)
- Charles Plessy
- Andreas Tille
- Étienne Mollier
External Resources:
- Homepage [metacpan.org]
Similar packages:
BioPerl wrappers: scripts
Contains scripts from the BioPerl-Run package. This package will also install all wrappable applications packaged in Debian. The ones that are not Free are "Suggested" by this package.
Other Packages Related to bioperl-run
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- dep: bioperl (>= 1.7.4)
- Perl tools for computational molecular biology
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- dep: default-jdk-headless
- Standard Java or Java compatible Development Kit (headless)
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- dep: libbio-cluster-perl
- BioPerl cluster modules
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- dep: libbio-eutilities-perl
- BioPerl interface to the Entrez Programming Utilities (E-utilities)
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- dep: libbio-featureio-perl
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- dep: libbio-perl-run-perl (= 1.7.3-8)
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-
- dep: libbio-tools-run-alignment-clustalw-perl
- Bioperl interface to Clustal W
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- dep: libbio-tools-run-remoteblast-perl
- Object for remote execution of the NCBI Blast via HTTP
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- dep: libtest-requiresinternet-perl
- module to easily test network connectivity
-
- dep: perl
- Larry Wall's Practical Extraction and Report Language
-
- rec: amap-align
- Protein multiple alignment by sequence annealing
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- rec: bedtools
- suite of utilities for comparing genomic features
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- rec: bowtie
- Ultrafast memory-efficient short read aligner
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- rec: bwa
- Burrows-Wheeler Aligner
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- rec: clustalw
- global multiple nucleotide or peptide sequence alignment
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- rec: emboss
- European molecular biology open software suite
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- rec: exonerate
- generic tool for pairwise sequence comparison
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- rec: hmmer
- profile hidden Markov models for protein sequence analysis
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- rec: infernal
- inference of RNA secondary structural alignments
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- rec: kalign
- Global and progressive multiple sequence alignment
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- rec: lagan
- highly parametrizable pairwise global genome sequence aligner
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- rec: mafft
- Multiple alignment program for amino acid or nucleotide sequences
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- rec: maq
- maps short fixed-length polymorphic DNA sequence reads to reference sequences
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- rec: muscle
- Multiple alignment program of protein sequences
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- rec: ncbi-blast+-legacy
- NCBI Blast legacy call script
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- rec: ncoils
- coiled coil secondary structure prediction
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- rec: pal2nal
- converts proteins to genomic DNA alignment
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- rec: pftools
- build and search protein and DNA generalized profiles
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- rec: phylip
- package of programs for inferring phylogenies
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- rec: phyml
- Phylogenetic estimation using Maximum Likelihood
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- rec: primer3
- tool to design flanking oligo nucleotides for DNA amplification
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- rec: probalign
- multiple sequence alignment using partition function posterior probabilities
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- rec: probcons
- PROBabilistic CONSistency-based multiple sequence alignment
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- rec: raxml
- Randomized Axelerated Maximum Likelihood of phylogenetic trees
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- rec: samtools
- processing sequence alignments in SAM, BAM and CRAM formats
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- rec: sim4
- tool for aligning cDNA and genomic DNA
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- rec: t-coffee
- Multiple Sequence Alignment
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- rec: tigr-glimmer
- Gene detection in archea and bacteria
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- rec: wise
- comparison of biopolymers, like DNA and protein sequences
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- sug: fasta3
- Package not available
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- sug: gmap
- spliced and SNP-tolerant alignment for mRNA and short reads
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- sug: trnascan-se
- Package not available
Download bioperl-run
| Architecture | Package Size | Installed Size | Files |
|---|---|---|---|
| all | 35.2 kB | 91 kB | [list of files] |