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[ Source: debian-med  ]

Package: med-bio-dev (3.5.1)

Debian Med packages for development of bioinformatics applications

This metapackage will install Debian packages which might be helpful for development of applications for biological research.

Other Packages Related to med-bio-dev

  • depends
  • recommends
  • suggests
  • dep: med-config (= 3.5.1)
    Debian Med general config package
  • dep: med-tasks (= 3.5.1)
    Debian Med tasks for tasksel
  • sug: biobambam2
    tools for early stage alignment file processing
  • sug: bioclipse
    Package not available
  • sug: ctdconverter
    Convert CTD files into Galaxy tool and CWL CommandLineTool files
  • sug: galaxy-lib
    Package not available
  • sug: libbam-dev
    manipulates nucleotide sequence alignments in BAM or SAM format
  • sug: libbigwig-dev
    C library for handling bigWig files - header files
  • sug: libbiod-dev
    bioinformatics library in D (development files)
  • sug: libdisorder-dev
    library for entropy measurement of byte streams (devel)
  • sug: libfast-perl
    Package not available
  • sug: libforester-java
    Package not available
  • sug: libfreecontact-doc
    documentation for libfreecontact
  • sug: libgclib
    Package not available
  • sug: libgoby-java
    Package not available
  • sug: libmaus2-dev
    collection of data structures and algorithms for biobambam (devel)
  • sug: libmilib-java
    library for Next Generation Sequencing (NGS) data processing
  • sug: libmodhmm-dev
    library for constructing, training and scoring hidden Markov models (dev)
  • sug: libnexml-java
    Package not available
  • sug: libpbcopper-dev
    data structures, algorithms, and utilities for C++ applications -- header files
  • sug: libqcpp-dev
    Package not available
  • sug: libroadrunner-dev
    Package not available
  • sug: librostlab-blast-doc
    very fast C++ library for parsing the output of NCBI BLAST programs (doc)
  • sug: librostlab-doc
    C++ library for computational biology (documentation)
  • sug: libseqan3-dev
    C++ library for the analysis of biological sequences v3 (development)
  • sug: libsvmloc-dev
    PSORTb adapted library for svm machine-learning library (dev)
  • sug: libswarm2-dev
    Package not available
  • sug: mgltools-networkeditor
    Package not available
  • sug: mgltools-pybabel
    Package not available
  • sug: mgltools-vision
    Package not available
  • sug: octace-bioinfo
    Package not available
  • sug: pyfai
    Fast Azimuthal Integration scripts
  • sug: python-biopython-doc
    Documentation for the Biopython library
  • sug: python-cogent
    Package not available
  • sug: python-corepywrap
    Package not available
  • sug: python-kineticstools
    Package not available
  • sug: python-pbcommand
    Package not available
  • sug: python-pbcore
    virtual package provided by python3-pbcore
  • sug: python-pbh5tools
    Package not available
  • sug: python3-alignlib
    edit and Hamming distances for biological sequences
  • sug: python3-biopython-sql
    Biopython support for the BioSQL database schema (Python 3)
  • sug: python3-consensuscore2
    Package not available
  • sug: python3-ctdopts
    Gives your Python tools a CTD-compatible interface
  • sug: python3-deeptools
    platform for exploring biological deep-sequencing data
  • sug: python3-deeptoolsintervals
    handlig GTF-like sequence-associated interal-annotation
  • sug: python3-ete3
    Package not available
  • sug: python3-hyphy
    Package not available
  • sug: python3-intervaltree-bio
    Interval tree convenience classes for genomic data -- Python 3 library
  • sug: python3-loompy
    Package not available
  • sug: python3-mirtop
    annotate miRNAs with a standard mirna/isomir naming (Python 3)
  • sug: python3-misopy
    Package not available
  • sug: python3-pyani
    Python3 module for average nucleotide identity analyses
  • sug: python3-pycosat
    Python bindings to picosat
  • sug: python3-pyflow
    lightweight parallel task engine for Python
  • sug: python3-roadrunner
    Package not available
  • sug: python3-seqcluster
    Package not available
  • sug: python3-skbio
    Python3 data structures, algorithms, educational resources for bioinformatic
  • sug: r-bioc-affy
    BioConductor methods for Affymetrix Oligonucleotide Arrays
  • sug: r-bioc-affyio
    BioConductor tools for parsing Affymetrix data files
  • sug: r-bioc-altcdfenvs
    BioConductor alternative CDF environments
  • sug: r-bioc-annotate
    BioConductor annotation for microarrays
  • sug: r-bioc-annotationdbi
    GNU R Annotation Database Interface for BioConductor
  • sug: r-bioc-annotationhub
    GNU R client to access AnnotationHub resources
  • sug: r-bioc-aroma.light
    BioConductor methods normalization and visualization of microarray data
  • sug: r-bioc-biocgenerics
    generic functions for Bioconductor
  • sug: r-bioc-biomart
    GNU R Interface to BioMart databases (Ensembl, COSMIC, Wormbase and Gramene)
  • sug: r-bioc-biomformat
    GNU R interface package for the BIOM file format
  • sug: r-bioc-biostrings
    GNU R string objects representing biological sequences
  • sug: r-bioc-biovizbase
    GNU R basic graphic utilities for visualization of genomic data
  • sug: r-bioc-bitseq
    transcript expression inference and analysis for RNA-seq data
  • sug: r-bioc-bsgenome
    BioConductor infrastructure for Biostrings-based genome data packages
  • sug: r-bioc-cner
    CNE Detection and Visualization
  • sug: r-bioc-cummerbund
    tool for analysis of Cufflinks RNA-Seq output
  • sug: r-bioc-dada2
    sample inference from amplicon sequencing data
  • sug: r-bioc-deseq2
    R package for RNA-Seq Differential Expression Analysis
  • sug: r-bioc-dnacopy
    R package: DNA copy number data analysis
  • sug: r-bioc-ebseq
    R package for RNA-Seq Differential Expression Analysis
  • sug: r-bioc-ensembldb
    GNU R utilities to create and use an Ensembl based annotation database
  • sug: r-bioc-genefilter
    methods for filtering genes from microarray experiments
  • sug: r-bioc-geneplotter
    R package of functions for plotting genomic data
  • sug: r-bioc-genomeinfodb
    BioConductor utilities for manipulating chromosome identifiers
  • sug: r-bioc-genomicalignments
    BioConductor representation and manipulation of short genomic alignments
  • sug: r-bioc-genomicfeatures
    GNU R tools for making and manipulating transcript centric annotations
  • sug: r-bioc-genomicranges
    BioConductor representation and manipulation of genomic intervals
  • sug: r-bioc-geoquery
    Get data from NCBI Gene Expression Omnibus (GEO)
  • sug: r-bioc-go.db
    annotation maps describing the entire Gene Ontology
  • sug: r-bioc-graph
    handle graph data structures for BioConductor
  • sug: r-bioc-gviz
    Plotting data and annotation information along genomic coordinates
  • sug: r-bioc-hypergraph
    BioConductor hypergraph data structures
  • sug: r-bioc-impute
    Imputation for microarray data
  • sug: r-bioc-iranges
    GNU R low-level containers for storing sets of integer ranges
  • sug: r-bioc-limma
    linear models for microarray data
  • sug: r-bioc-makecdfenv
    BioConductor CDF Environment Maker
  • sug: r-bioc-mergeomics
    Integrative network analysis of omics data
  • sug: r-bioc-metagenomeseq
    Package not available
  • sug: r-bioc-mofa
    Package not available
  • sug: r-bioc-multiassayexperiment
    Software for integrating multi-omics experiments in BioConductor
  • sug: r-bioc-pcamethods
    BioConductor collection of PCA methods
  • sug: r-bioc-phyloseq
    GNU R handling and analysis of high-throughput microbiome census data
  • sug: r-bioc-preprocesscore
    BioConductor collection of pre-processing functions
  • sug: r-bioc-qusage
    qusage: Quantitative Set Analysis for Gene Expression
  • sug: r-bioc-rbgl
    R interface to the graph algorithms contained in the BOOST library
  • sug: r-bioc-rentrez
    Package not available
  • sug: r-bioc-rsamtools
    GNU R binary alignment (BAM), variant call (BCF), or tabix file import
  • sug: r-bioc-rtracklayer
    GNU R interface to genome browsers and their annotation tracks
  • sug: r-bioc-savr
    GNU R parse and analyze Illumina SAV files
  • sug: r-bioc-shortread
    GNU R classes and methods for high-throughput short-read sequencing data
  • sug: r-bioc-snpstats
    BioConductor SnpMatrix and XSnpMatrix classes and methods
  • sug: r-bioc-tfbstools
    GNU R Transcription Factor Binding Site (TFBS) Analysis
  • sug: r-bioc-tximport
    transcript-level estimates for biological sequencing
  • sug: r-bioc-variantannotation
    BioConductor annotation of genetic variants
  • sug: r-bioc-xvector
    BioConductor representation and manpulation of external sequences
  • sug: r-cran-corrplot
    Visualization of a Correlation Matrix
  • sug: r-cran-drinsight
    Package not available
  • sug: r-cran-dt
    GNU R wrapper of the JavaScript library 'DataTables'
  • sug: r-cran-dynamictreecut
    Methods for Detection of Clusters in Hierarchical Clustering
  • sug: r-cran-future.apply
    apply function to elements in parallel using futures
  • sug: r-cran-future.batchtools
    Future API for Parallel and Distributed Processing
  • sug: r-cran-ica
    Independent Component Analysis
  • sug: r-cran-kaos
    Encoding of Sequences Based on Frequency Matrix Chaos
  • sug: r-cran-metap
    Meta-Analysis of Significance Values
  • sug: r-cran-natserv
    GNU R 'NatureServe' Interface
  • sug: r-cran-pcapp
    Robust PCA by Projection Pursuit
  • sug: r-cran-proc
    Display and Analyze ROC Curves
  • sug: r-cran-rann
    Fast Nearest Neighbour Search Using L2 Metric
  • sug: r-cran-rocr
    GNU R package to prepare and display ROC curves
  • sug: r-cran-rsvd
    Randomized Singular Value Decomposition
  • sug: r-cran-sctransform
    Variance Stabilizing Transformations for Single Cell UMI Data
  • sug: r-cran-seurat
    Tools for Single Cell Genomics
  • sug: r-cran-tsne
    t-distributed stochastic neighbor embedding for R (t-SNE)
  • sug: r-other-apmswapp
    Package not available
  • sug: ruby-rgfa
    parse, edit and write GFA format graphs in Ruby
  • sug: vdjtools
    Package not available

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