[ ソース: libfastahack ]
パッケージ: fastahack (0.0+20160702-1)
fastahack に関するリンク
Trisquel の資源:
libfastahack ソースパッケージをダウンロード:
- [libfastahack_0.0+20160702-1.dsc]
- [libfastahack_0.0+20160702.orig.tar.xz]
- [libfastahack_0.0+20160702-1.debian.tar.xz]
メンテナ:
Original Maintainers:
- Debian Med Packaging Team (メールアーカイブ)
- Andreas Tille
外部の資源:
- ホームページ [github.com]
類似のパッケージ:
utility for indexing and sequence extraction from FASTA files
fastahack is a small application for indexing and extracting sequences and subsequences from FASTA files. The included Fasta.cpp library provides a FASTA reader and indexer that can be embedded into applications which would benefit from directly reading subsequences from FASTA files. The library automatically handles index file generation and use.
Features:
* FASTA index (.fai) generation for FASTA files * Sequence extraction * Subsequence extraction * Sequence statistics (currently only entropy is provided)
Sequence and subsequence extraction use fseek64 to provide fastest-possible extraction without RAM-intensive file loading operations. This makes fastahack a useful tool for bioinformaticists who need to quickly extract many subsequences from a reference FASTA sequence.
その他の fastahack 関連パッケージ
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- dep: libc6 (>= 2.14) [amd64]
- GNU C Library: Shared libraries
以下のパッケージによって提供される仮想パッケージでもあります: libc6-udeb
- dep: libc6 (>= 2.4) [i386]
-
- dep: libdisorder0 (>= 0.0.2)
- library for entropy measurement of byte streams
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- dep: libfastahack0
- library for indexing and sequence extraction from FASTA files (lib)
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- dep: libgcc1 (>= 1:3.0)
- GCC support library
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- dep: libstdc++6 (>= 5.2)
- GNU Standard C++ Library v3