Пакет: fastahack (0.0+20160702-1)

Връзки за fastahack

Ресурси за Trisquel:

Изтегляне на пакет-източник libfastahack.

Отговорник:

Debian Med Packaging Team (Пощенски архив)

Original Maintainers:

Debian Med Packaging Team (Пощенски архив)
Andreas Tille

Външни препратки:

Начална страница [github.com]

Подобни пакети:

utility for indexing and sequence extraction from FASTA files

fastahack is a small application for indexing and extracting sequences and subsequences from FASTA files. The included Fasta.cpp library provides a FASTA reader and indexer that can be embedded into applications which would benefit from directly reading subsequences from FASTA files. The library automatically handles index file generation and use.

Features:

 * FASTA index (.fai) generation for FASTA files
 * Sequence extraction
 * Subsequence extraction
 * Sequence statistics (currently only entropy is provided)

Sequence and subsequence extraction use fseek64 to provide fastest-possible extraction without RAM-intensive file loading operations. This makes fastahack a useful tool for bioinformaticists who need to quickly extract many subsequences from a reference FASTA sequence.

Други пакети, свързани с fastahack

зависимости

препоръчани

предложени

dep: libc6 (>= 2.14) [amd64]

GNU C Library: Shared libraries
също и виртуален пакет, предлаган от libc6-udeb

dep: libc6 (>= 2.4) [i386]
dep: libdisorder0 (>= 0.0.2)

library for entropy measurement of byte streams
dep: libfastahack0

library for indexing and sequence extraction from FASTA files (lib)
dep: libgcc1 (>= 1:3.0)

GCC support library
dep: libstdc++6 (>= 5.2)

GNU Standard C++ Library v3

Изтегляне на fastahack

Изтегляне за всички налични архитектури
Архитектура	Големина на пакета	Големина след инсталиране	Файлове
amd64	9,5 кБ	36 кБ	[списък на файловете]
i386	9,7 кБ	31 кБ	[списък на файловете]

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