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パッケージ: r-other-hms-dbmi-spp (1.15-1)

GNU R ChIP-seq processing pipeline

R package for anlaysis of ChIP-seq and other functional sequencing data 

 * Assess overall DNA-binding signals in the data and select appropriate
   quality of tag alignment.
 * Discard or restrict positions with abnormally high number of tags.
 * Calculate genome-wide profiles of smoothed tag density and save them
   in WIG files for viewing in other browsers.
 * Calculate genome-wide profiles providing conservative statistical
   estimates of fold enrichment ratios along the genome. These can be
   exported for browser viewing, or thresholded to determine regions of
   significant enrichment/depletion.
 * Determine statistically significant point binding positions
 * Assess whether the set of point binding positions detected at a
   current sequencing depth meets saturation criteria, and if does not,
   estimate what sequencing depth would be required to do so.

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  • dep: libgcc1 (>= 1:3.0)
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  • dep: r-api-3.4
    以下のパッケージによって提供される仮想パッケージです: r-base-core
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  • dep: r-cran-catools
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  • dep: zlib1g (>= 1:1.1.4)
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r-other-hms-dbmi-spp のダウンロード

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i386 167.9 kB297 kB [ファイル一覧]