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[ 原始碼： r-other-hms-dbmi-spp  ]

套件： r-other-hms-dbmi-spp (1.15-1)

GNU R ChIP-seq processing pipeline

R package for anlaysis of ChIP-seq and other functional sequencing data 

 * Assess overall DNA-binding signals in the data and select appropriate
   quality of tag alignment.
 * Discard or restrict positions with abnormally high number of tags.
 * Calculate genome-wide profiles of smoothed tag density and save them
   in WIG files for viewing in other browsers.
 * Calculate genome-wide profiles providing conservative statistical
   estimates of fold enrichment ratios along the genome. These can be
   exported for browser viewing, or thresholded to determine regions of
   significant enrichment/depletion.
 * Determine statistically significant point binding positions
 * Assess whether the set of point binding positions detected at a
   current sequencing depth meets saturation criteria, and if does not,
   estimate what sequencing depth would be required to do so.

其他與 r-other-hms-dbmi-spp 有關的套件

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  • dep: libbz2-1.0
    high-quality block-sorting file compressor library - runtime
  • dep: libc6 (>= 2.4)
    GNU C Library: Shared libraries
    同時作為一個虛擬套件由這些套件提供： libc6-udeb
  • dep: libgcc1 (>= 1:3.0)
    GCC support library
  • dep: libstdc++6 (>= 5.2)
    GNU Standard C++ Library v3
  • dep: r-api-3.4
    本虛擬套件由這些套件提供： r-base-core
  • dep: r-base-core (>= 3.4.3-1)
    GNU R core of statistical computation and graphics system
  • dep: r-bioc-rsamtools
    GNU R binary alignment (BAM), variant call (BCF), or tabix file import
  • dep: r-cran-catools
    GNU R package providing various utility functions
  • dep: zlib1g (>= 1:1.1.4)
    compression library - runtime

下載 r-other-hms-dbmi-spp

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硬體架構 套件大小 安裝後大小 檔案
i386 167.9 kB297 kB [文件列表]