[ Bron: ariba ]
Pakket: ariba (2.14.6+ds-3build1)
Verwijzigingen voor ariba
Trisquel bronnen:
Het bronpakket ariba downloaden:
Beheerder:
Original Maintainers:
- Debian Med Packaging Team (Mailarchief)
- Sascha Steinbiss
Externe bronnen:
- Homepage [github.com]
Vergelijkbare pakketten:
Antibiotic Resistance Identification By Assembly
ARIBA is a tool that identifies antibiotic resistance genes by running local assemblies. The input is a FASTA file of reference genes and paired sequencing reads. ARIBA reports which of the reference genes were found, plus detailed information on the quality of the assemblies and any variants between the sequencing reads and the reference genes.
Andere aan ariba gerelateerde pakketten
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- dep: bowtie2 (>= 2.1.0)
- ultrafast memory-efficient short read aligner
-
- dep: cd-hit
- suite of programs designed to quickly group sequences
-
- dep: fastaq (>= 3.12.0)
- FASTA and FASTQ file manipulation tools
-
- dep: libc6 (>= 2.14) [amd64]
- GNU C Library: Shared libraries
Ook een virtueel pakket geboden door: libc6-udeb
- dep: libc6 (>= 2.17) [niet amd64]
-
- dep: libfml0 (>= 0.1-4~)
- library for assembling Illumina short reads in small regions
-
- dep: libgcc-s1 (>= 3.3.1)
- GCC support library
-
- dep: libminimap0 (>= 0.2)
- library for approximate mapping of long biosequences
-
- dep: libstdc++6 (>= 5.2)
- GNU Standard C++ Library v3
-
- dep: mash
- fast genome and metagenome distance estimation using MinHash
-
- dep: mummer
- Efficient sequence alignment of full genomes
-
- dep: python3
- interactive high-level object-oriented language (default python3 version)
- dep: python3 (<< 3.11)
- dep: python3 (>= 3.10~)
-
- dep: python3-biopython
- Python3 library for bioinformatics
-
- dep: python3-bs4
- error-tolerant HTML parser for Python 3
-
- dep: python3-dendropy
- DendroPy Phylogenetic Computing Library (Python 3)
-
- dep: python3-matplotlib
- Python based plotting system in a style similar to Matlab (Python 3)
-
- dep: python3-pymummer (>= 0.10.2)
- Python 3 interface to MUMmer
-
- dep: python3-pysam (>= 0.9.1)
- interface for the SAM/BAM sequence alignment and mapping format (Python 3)
-
- dep: python3-tk
- Tkinter - Writing Tk applications with Python 3.x
-
- dep: zlib1g (>= 1:1.1.4)
- compression library - runtime
-
- sug: spades
- genome assembler for single-cell and isolates data sets