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[ Bron: discosnp ]
Pakket: discosnp (1:2.6.2-1)
Verwijzigingen voor discosnp
Trisquel bronnen:
Het bronpakket discosnp downloaden:
Beheerder:
Original Maintainers:
- Debian Med Packaging Team (Mailarchief)
- Olivier Sallou
- Andreas Tille
Externe bronnen:
- Homepage [colibread.inria.fr]
Vergelijkbare pakketten:
discovering Single Nucleotide Polymorphism from raw set(s) of reads
Software discoSnp is designed for discovering Single Nucleotide Polymorphism (SNP) from raw set(s) of reads obtained with Next Generation Sequencers (NGS).
Note that number of input read sets is not constrained, it can be one, two, or more. Note also that no other data as reference genome or annotations are needed.
The software is composed by two modules. First module, kissnp2, detects SNPs from read sets. A second module, kissreads, enhance the kissnp2 results by computing per read set and for each found SNP:
1) its mean read coverage 2) the (phred) quality of reads generating the polymorphism.
This program is superseded by DiscoSnp++.
Andere aan discosnp gerelateerde pakketten
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- dep: gatb-core
- Genome Analysis Toolbox with de-Bruijn graph
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- dep: libc6 (>= 2.34)
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Ook een virtueel pakket geboden door: libc6-udeb
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- dep: libgatbcore3 (>= 1.4.2) [amd64]
- dynamic library of the Genome Analysis Toolbox
- dep: libgatbcore3 (>= 1.4.2+dfsg) [niet amd64]
-
- dep: libgcc-s1 (>= 3.3.1)
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- dep: libhdf5-103-1
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- dep: libstdc++6 (>= 11)
- GNU Standard C++ Library v3
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- dep: python3
- interactive high-level object-oriented language (default python3 version)
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- dep: zlib1g (>= 1:1.2.6)
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