Pakiet: ivar (1.3.1+dfsg-4)

Odnośniki dla ivar

Zasoby systemu Trisquel:

Pobieranie pakietu źródłowego ivar:

Opiekun:

Debian Med Packaging Team (Archiwum e-mail)

Original Maintainers:

Debian Med Packaging Team (Archiwum e-mail)
Andreas Tille
Étienne Mollier

Zasoby zewnętrzne:

Strona internetowa [github.com]

Podobne pakiety:

functions broadly useful for viral amplicon-based sequencing

iVar is a computational package that contains functions broadly useful for viral amplicon-based sequencing. Additional tools for metagenomic sequencing are actively being incorporated into iVar. While each of these functions can be accomplished using existing tools, iVar contains an intersection of functionality from multiple tools that are required to call iSNVs and consensus sequences from viral sequencing data across multiple replicates. iVar provided the following functions:

 1. trimming of primers and low-quality bases,
 2. consensus calling,
 3. variant calling - both iSNVs and insertions/deletions, and
 4. identifying mismatches to primer sequences and excluding the
    corresponding reads from alignment files.

Inne pakiety związane z ivar

wymaga

poleca

sugeruje

dep: libc6 (>= 2.34)

GNU C Library: Shared libraries
również pakiet wirtualny udostępniany przez libc6-udeb
dep: libgcc-s1 (>= 3.3.1)

GCC support library
dep: libhts3 (>= 1.10)

C library for high-throughput sequencing data formats
dep: libstdc++6 (>= 11)

GNU Standard C++ Library v3

rec: samtools

processing sequence alignments in SAM, BAM and CRAM formats

Pobieranie ivar

Pobierz dla wszystkich dostępnych architektur
Architektura	Rozmiar pakietu	Rozmiar po instalacji	Pliki
amd64	201,2 KiB	1407 KiB	[lista plików]
arm64	194,4 KiB	1363 KiB	[lista plików]

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