Paket: ivar (1.3.1+dfsg-4)

Länkar för ivar

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Ansvarig:

Debian Med Packaging Team (E-postarkiv)

Original Maintainers:

Debian Med Packaging Team (E-postarkiv)
Andreas Tille
Étienne Mollier

Externa resurser:

Hemsida [github.com]

Liknande paket:

functions broadly useful for viral amplicon-based sequencing

iVar is a computational package that contains functions broadly useful for viral amplicon-based sequencing. Additional tools for metagenomic sequencing are actively being incorporated into iVar. While each of these functions can be accomplished using existing tools, iVar contains an intersection of functionality from multiple tools that are required to call iSNVs and consensus sequences from viral sequencing data across multiple replicates. iVar provided the following functions:

 1. trimming of primers and low-quality bases,
 2. consensus calling,
 3. variant calling - both iSNVs and insertions/deletions, and
 4. identifying mismatches to primer sequences and excluding the
    corresponding reads from alignment files.

Andra paket besläktade med ivar

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föreslår

dep: libc6 (>= 2.34)

GNU C Library: Shared libraries
också ett virtuellt paket som tillhandahålls av libc6-udeb
dep: libgcc-s1 (>= 3.3.1)

GCC support library
dep: libhts3 (>= 1.10)

C library for high-throughput sequencing data formats
dep: libstdc++6 (>= 11)

GNU Standard C++ Library v3

rec: samtools

processing sequence alignments in SAM, BAM and CRAM formats

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Hämtningar för alla tillgängliga arkitekturer
Arkitektur	Paketstorlek	Installerad storlek	Filer
amd64	201,2 kbyte	1407 kbyte	[filförteckning]
arm64	194,4 kbyte	1363 kbyte	[filförteckning]

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