Skip to content
Sections
>> Trisquel >> Pakiety >> etiona >> python >> python3-pyfaidx
etiona  ] [  nabia  ] [  aramo  ]
[ Pakiet źródłowy: python-pyfaidx  ]

Pakiet: python3-pyfaidx (0.4.8.1-1)

efficient random access to fasta subsequences for Python 3

Samtools provides a function "faidx" (FAsta InDeX), which creates a small flat index file ".fai" allowing for fast random access to any subsequence in the indexed FASTA file, while loading a minimal amount of the file in to memory. This Python module implements pure Python classes for indexing, retrieval, and in-place modification of FASTA files using a samtools compatible index. The pyfaidx module is API compatible with the pygr seqdb module. A command-line script "faidx" is installed alongside the pyfaidx module, and facilitates complex manipulation of FASTA files without any programming knowledge.

This package provides the Python 3 modules to access fasta files.

Inne pakiety związane z python3-pyfaidx

  • wymaga
  • poleca
  • sugeruje
  • dep: python3
    interactive high-level object-oriented language (default python3 version)
  • dep: python3-pkg-resources
    Package Discovery and Resource Access using pkg_resources
  • dep: python3-six
    Python 2 and 3 compatibility library (Python 3 interface)

Pobieranie python3-pyfaidx

Pobierz dla wszystkich dostępnych architektur
Architektura Rozmiar pakietu Rozmiar po instalacji Pliki
all 20,9 KiB99 KiB [lista plików]