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[ Pakiet źródłowy: bitseq  ]

Pakiet: bitseq (0.7.5+dfsg-3ubuntu1)

Bayesian Inference of Transcripts from Sequencing Data

BitSeq is an application for inferring expression levels of individual transcripts from sequencing (RNA-Seq) data and estimating differential expression (DE) between conditions. An advantage of this approach is the ability to account for both technical uncertainty and intrinsic biological variance in order to avoid false DE calls. The technical contribution to the uncertainty comes both from finite read-depth and the possibly ambiguous mapping of reads to multiple transcripts.

Inne pakiety związane z bitseq

  • wymaga
  • poleca
  • sugeruje
  • dep: libc6 (>= 2.23)
    GNU C Library: Shared libraries
    również pakiet wirtualny udostępniany przez libc6-udeb
  • dep: libgcc1 (>= 1:3.0)
    GCC support library
  • dep: libgomp1 (>= 4.9)
    GCC OpenMP (GOMP) support library
  • dep: libstdc++6 (>= 5.2)
    GNU Standard C++ Library v3
  • dep: python
    interactive high-level object-oriented language (default version)
  • dep: zlib1g (>= 1:1.2.3.3)
    compression library - runtime
  • sug: samtools
    processing sequence alignments in SAM and BAM formats

Pobieranie bitseq

Pobierz dla wszystkich dostępnych architektur
Architektura Rozmiar pakietu Rozmiar po instalacji Pliki
amd64 330,6 KiB1819 KiB [lista plików]
i386 352,9 KiB1886 KiB [lista plików]