Pakiet: alien-hunter (1.7-7)
Odnośniki dla alien-hunter
Zasoby systemu Trisquel:
- Install using apturl
- Entry at directory.fsf.org
- Raporty o błędach
- Changelog
- Informacje nt. praw autorskich
Pobieranie pakietu źródłowego alien-hunter:
Opiekun:
Original Maintainers:
- Debian Med Packaging Team (Archiwum e-mail)
- Andreas Tille
Zasoby zewnętrzne:
- Strona internetowa [www.sanger.ac.uk]
Podobne pakiety:
Interpolated Variable Order Motifs to identify horizontally acquired DNA
Alien_hunter is an application for the prediction of putative Horizontal Gene Transfer (HGT) events with the implementation of Interpolated Variable Order Motifs (IVOMs). An IVOM approach exploits compositional biases using variable order motif distributions and captures more reliably the local composition of a sequence compared to fixed-order methods. Optionally the predictions can be parsed into a 2-state 2nd order Hidden Markov Model (HMM), in a change-point detection framework, to optimize the localization of the boundaries of the predicted regions. The predictions (embl format) can be automatically loaded into Artemis genome viewer freely available at: http://www.sanger.ac.uk/Software/Artemis/.
Inne pakiety związane z alien-hunter
|
|
|
-
- dep: libbiojava-java
- Java API to biological data and applications (default version)
-
- dep: libbytecode-java
- Java bytecode manipulation library
-
- dep: libcommons-cli-java
- Command line arguments and options parsing library
-
- dep: libcommons-collections3-java
- Apache Commons Collections - Extended Collections API for Java
-
- dep: libcommons-dbcp-java
- Database Connection Pooling Services
-
- dep: libcommons-pool-java
- pooling implementation for Java objects
-
- sug: bioperl
- Perl tools for computational molecular biology
Pobieranie alien-hunter
| Architektura | Rozmiar pakietu | Rozmiar po instalacji | Pliki |
|---|---|---|---|
| all | 28,1 KiB | 91 KiB | [lista plików] |