套件: alien-hunter (1.7-7)
alien-hunter 的相關超連結
Trisquel 的資源:
下載原始碼套件 alien-hunter:
維護者:
Original Maintainers:
- Debian Med Packaging Team (郵件存檔)
- Andreas Tille
外部的資源:
- 主頁 [www.sanger.ac.uk]
相似套件:
Interpolated Variable Order Motifs to identify horizontally acquired DNA
Alien_hunter is an application for the prediction of putative Horizontal Gene Transfer (HGT) events with the implementation of Interpolated Variable Order Motifs (IVOMs). An IVOM approach exploits compositional biases using variable order motif distributions and captures more reliably the local composition of a sequence compared to fixed-order methods. Optionally the predictions can be parsed into a 2-state 2nd order Hidden Markov Model (HMM), in a change-point detection framework, to optimize the localization of the boundaries of the predicted regions. The predictions (embl format) can be automatically loaded into Artemis genome viewer freely available at: http://www.sanger.ac.uk/Software/Artemis/.
其他與 alien-hunter 有關的套件
|
|
|
-
- dep: libbiojava-java
- Java API to biological data and applications (default version)
-
- dep: libbytecode-java
- Java bytecode manipulation library
-
- dep: libcommons-cli-java
- Command line arguments and options parsing library
-
- dep: libcommons-collections3-java
- Apache Commons Collections - Extended Collections API for Java
-
- dep: libcommons-dbcp-java
- Database Connection Pooling Services
-
- dep: libcommons-pool-java
- pooling implementation for Java objects
-
- sug: bioperl
- Perl tools for computational molecular biology