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Пакет: python3-biopython (1.79+dfsg-3)

Python3 library for bioinformatics

The Biopython Project is an international association of developers of freely available Python tools for computational molecular biology.

It is a distributed collaborative effort to develop Python3 libraries and applications which address the needs of current and future work in bioinformatics. The source code is made available under the Biopython License, which is extremely liberal and compatible with almost every license in the world. The project works along with the Open Bioinformatics Foundation, who generously provide web and CVS space for the project.

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  • dep: libc6 (>= 2.17)
    GNU C Library: Shared libraries
    также виртуальный пакет, предоставляемый libc6-udeb
  • dep: python3
    interactive high-level object-oriented language (default python3 version)
    dep: python3 (<< 3.11)
    dep: python3 (>= 3.10~)
  • dep: python3-numpy (>= 1:1.20.0)
    Fast array facility to the Python 3 language
  • dep: python3-numpy-abi9
    виртуальный пакет, предоставляемый python3-numpy
  • dep: python3-renderpm
    python low level render interface
  • dep: python3-reportlab
    ReportLab library to create PDF documents using Python3
  • dep: w3c-sgml-lib
    w3.org DTD and catalog files
  • rec: ncbi-blast+ (>= 2.10.1-3)
    next generation suite of BLAST sequence search tools
  • rec: python-biopython-doc (= 1.79+dfsg-3)
    Documentation for the Biopython library
  • sug: bwa
    Burrows-Wheeler Aligner
  • sug: clustalo
    General-purpose multiple sequence alignment program for proteins
  • sug: clustalw
    global multiple nucleotide or peptide sequence alignment
  • sug: dialign
    Segment-based multiple sequence alignment
  • sug: dssp (>= 4.0.0)
    protein secondary structure assignment based on 3D structure
  • sug: emboss
    European molecular biology open software suite
  • sug: fasttree
    phylogenetic trees from alignments of nucleotide or protein sequences
  • sug: mafft
    Multiple alignment program for amino acid or nucleotide sequences
  • sug: muscle
    Multiple alignment program of protein sequences
  • sug: phylip
    package of programs for inferring phylogenies
  • sug: phyml
    Phylogenetic estimation using Maximum Likelihood
  • sug: prank
    Probabilistic Alignment Kit for DNA, codon and amino-acid sequences
  • sug: probcons
    PROBabilistic CONSistency-based multiple sequence alignment
  • sug: python3-matplotlib
    Python based plotting system in a style similar to Matlab (Python 3)
  • sug: python3-mmtf
    binary encoding of biological structures (Python 3)
  • sug: python3-mysqldb
    Python interface to MySQL
  • sug: python3-pil
    Python Imaging Library (Python3)
  • sug: python3-psycopg2
    Python 3 module for PostgreSQL
  • sug: python3-rdflib
    Python 3 library containing an RDF triple store and RDF parsers/serializers
  • sug: python3-scipy
    scientific tools for Python 3
  • sug: python3-tk
    Tkinter - Writing Tk applications with Python 3.x
  • sug: raxml
    Randomized Axelerated Maximum Likelihood of phylogenetic trees
  • sug: samtools
    processing sequence alignments in SAM, BAM and CRAM formats
  • sug: t-coffee
    Multiple Sequence Alignment
  • sug: wise
    comparison of biopolymers, like DNA and protein sequences

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