Пакет: seer (1.1.4-2build2)
Ссылки для seer
Ресурсы Trisquel:
Исходный код seer:
Сопровождающий:
Original Maintainers:
- Debian Med Packaging Team (Почтовый архив)
- Andreas Tille
Внешние ресурсы:
- Сайт [github.com]
Подобные пакеты:
genomic sequence element (kmer) enrichment analysis
Bacterial genomes vary extensively in terms of both gene content and gene sequence - this plasticity hampers the use of traditional SNP-based methods for identifying all genetic associations with phenotypic variation. SEER provides a computationally scalable and widely applicable statistical method for the identification of sequence elements that are significantly enriched in a phenotype of interest. SEER is applicable to even tens of thousands of genomes by counting variable- length k-mers using a distributed string-mining algorithm. Robust options are provided for association analysis that also correct for the clonal population structure of bacteria. Using large collections of genomes of the major human pathogen Streptococcus pneumoniae, SEER identifies relevant previously characterised resistance determinants for several antibiotics.
Другие пакеты, относящиеся к seer
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- dep: libarmadillo9 (>= 1:9.800.4+dfsg)
- streamlined C++ linear algebra library
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- dep: libblas3
- Basic Linear Algebra Reference implementations, shared library
- или libblas.so.3
- виртуальный пакет, предоставляемый libatlas3-base, libblas3, libblis3-openmp, libblis3-pthread, libblis3-serial, libopenblas0-openmp, libopenblas0-pthread, libopenblas0-serial
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- dep: libboost-program-options1.71.0
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- dep: libc6 (>= 2.29)
- GNU C Library: Shared libraries
также виртуальный пакет, предоставляемый libc6-udeb
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- dep: libgcc-s1 (>= 3.0) [amd64]
- GCC support library
- dep: libgcc-s1 (>= 3.5) [armhf]
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- dep: libgzstream0 (>= 1.5+dfsg)
- provide functionality of zlib C-library in a C++ iostream
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- dep: libhdf5-103
- Hierarchical Data Format 5 (HDF5) - runtime files - serial version
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- dep: libstdc++6 (>= 9)
- GNU Standard C++ Library v3
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- dep: libtext-csv-perl
- comma-separated values manipulator (using XS or PurePerl)
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- dep: zlib1g (>= 1:1.1.4)
- compression library - runtime
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- sug: fsm-lite
- frequency-based string mining (lite)
Загрузка seer
| Архитектура | Размер пакета | В установленном виде | Файлы |
|---|---|---|---|
| amd64 | 426,3 Кб | 1887 Кб | [список файлов] |
| armhf | 343,6 Кб | 1134 Кб | [список файлов] |