套件： seer (1.1.4-2build2)
seer 的相關超連結
Trisquel 的資源：
下載原始碼套件 seer：
維護者：
Original Maintainers:
- Debian Med Packaging Team (郵件存檔)
- Andreas Tille
外部的資源：
- 主頁 [github.com]
相似套件：
genomic sequence element (kmer) enrichment analysis
Bacterial genomes vary extensively in terms of both gene content and gene sequence - this plasticity hampers the use of traditional SNP-based methods for identifying all genetic associations with phenotypic variation. SEER provides a computationally scalable and widely applicable statistical method for the identification of sequence elements that are significantly enriched in a phenotype of interest. SEER is applicable to even tens of thousands of genomes by counting variable- length k-mers using a distributed string-mining algorithm. Robust options are provided for association analysis that also correct for the clonal population structure of bacteria. Using large collections of genomes of the major human pathogen Streptococcus pneumoniae, SEER identifies relevant previously characterised resistance determinants for several antibiotics.
其他與 seer 有關的套件
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- dep: libarmadillo9 (>= 1:9.800.4+dfsg)
- streamlined C++ linear algebra library
-
- dep: libblas3
- Basic Linear Algebra Reference implementations, shared library
- 或者 libblas.so.3
- 本虛擬套件由這些套件提供： libatlas3-base, libblas3, libblis3-openmp, libblis3-pthread, libblis3-serial, libopenblas0-openmp, libopenblas0-pthread, libopenblas0-serial
-
- dep: libboost-program-options1.71.0
- program options library for C++
-
- dep: libc6 (>= 2.29)
- GNU C Library: Shared libraries
同時作為一個虛擬套件由這些套件提供： libc6-udeb
-
- dep: libgcc-s1 (>= 3.0) [amd64]
- GCC support library
- dep: libgcc-s1 (>= 3.5) [armhf]
-
- dep: libgzstream0 (>= 1.5+dfsg)
- provide functionality of zlib C-library in a C++ iostream
-
- dep: libhdf5-103
- Hierarchical Data Format 5 (HDF5) - runtime files - serial version
-
- dep: libstdc++6 (>= 9)
- GNU Standard C++ Library v3
-
- dep: libtext-csv-perl
- comma-separated values manipulator (using XS or PurePerl)
-
- dep: zlib1g (>= 1:1.1.4)
- compression library - runtime
-
- sug: fsm-lite
- frequency-based string mining (lite)