[ nabia ]
[ aramo ]
[ Zdroj: kleborate ]
Balík: kleborate (2.2.0-1)
Odkazy pre kleborate
Zdroje Trisquel:
Stiahnuť zdrojový balík kleborate:
Správca:
Original Maintainers:
- Debian Med Packaging Team (Konferencia)
- Andreas Tille
- Étienne Mollier
Externé zdroje:
- Domovská stránka [github.com]
Podobné balíky:
tool to screen Klebsiella genome assemblies
Kleborate is a tool to screen Klebsiella genome assemblies for:
* MLST sequence type * species (e.g. K. pneumoniae, K. quasipneumoniae, K. variicola, etc.) * ICEKp associated virulence loci: yersiniabactin (ybt), colibactin (clb) * virulence plasmid associated loci: salmochelin (iro), aerobactin (iuc), hypermucoidy (rmpA, rmpA2) * antimicrobial resistance genes, including quinolone resistance SNPs and colistin resistance truncations * K (capsule) and O antigen (LPS) serotype prediction, via wzi alleles and Kaptive
Ostatné balíky súvisiace s balíkom kleborate
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- dep: kaptive
- obtain information about K and O types for Klebsiella genome assemblies
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- dep: kaptive-data
- reference data for kaptive for Klebsiella genome assemblies
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- dep: mash
- fast genome and metagenome distance estimation using MinHash
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- dep: ncbi-blast+
- next generation suite of BLAST sequence search tools
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- dep: python3
- interactive high-level object-oriented language (default python3 version)
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- dep: python3-biopython
- Python3 library for bioinformatics
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- dep: python3-distutils
- distutils package for Python 3.x
Stiahnuť kleborate
| Architektúra | Veľkosť balíka | Nainštalovaná veľkosť | Súbory |
|---|---|---|---|
| amd64 | 8,571.3 kB | 62499 kB | [zoznam súborov] |
| arm64 | 8,571.3 kB | 62499 kB | [zoznam súborov] |
| ppc64el | 8,570.5 kB | 65523 kB | [zoznam súborov] |