Balík: stringtie (2.1.1+ds-2)
Odkazy pre stringtie
Zdroje Trisquel:
Stiahnuť zdrojový balík stringtie:
Správca:
Original Maintainers:
- Debian Med Packaging Team (Konferencia)
- Steffen Moeller
Externé zdroje:
- Domovská stránka [ccb.jhu.edu]
Podobné balíky:
assemble short RNAseq reads to transcripts
The abundance of transcripts in a human tissue sample can be determined by RNA sequencing. The exact sequence sampled may be random, depending on the technology used. And it may be short, i.e. shorter than the transcript. At some point, many shorter reads need to be assembled to the model the complete transcripts.
StringTie knows how to assemble of RNA-Seq into potential transcripts without the need of a reference genome and provides a quantification also of the splice variants.
Ostatné balíky súvisiace s balíkom stringtie
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- dep: libc6 (>= 2.14) [amd64]
- GNU C Library: Shared libraries
tiež virtuálny balík poskytovaný balíkom libc6-udeb
- dep: libc6 (>= 2.7) [armhf]
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- dep: libgcc-s1 (>= 3.4) [amd64]
- GCC support library
- dep: libgcc-s1 (>= 3.5) [armhf]
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- dep: libhts3 (>= 1.10)
- C library for high-throughput sequencing data formats
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- dep: libstdc++6 (>= 4.1.1)
- GNU Standard C++ Library v3
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- dep: zlib1g (>= 1:1.2.3.3)
- compression library - runtime
Stiahnuť stringtie
Architektúra | Veľkosť balíka | Nainštalovaná veľkosť | Súbory |
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amd64 | 396.2 kB | 1047 kB | [zoznam súborov] |
armhf | 344.8 kB | 674 kB | [zoznam súborov] |