Paket: libtfbs-perl (0.7.1-1)
Länkar för libtfbs-perl
Trisquelresurser:
Hämta källkodspaketet libtfbs-perl:
Ansvarig:
Original Maintainers:
- Debian Med Packaging Team (E-postarkiv)
- Steffen Moeller
- Charles Plessy
- Andreas Tille
Externa resurser:
- Hemsida [tfbs.genereg.net]
Liknande paket:
scanning DNA sequence with a position weight matrix
The TFBS perl modules comprise a set of routines to interact with the Transfac and Jaspar databases that describe a special family of proteins, the transcription factors. These bind to genomic DNA to initiate (or prevent) the readout of a gene. Once multiple binding sites are known for a transcription factor, these are gathered in a single file and are aligned in order to find position-specific characteristica that might be used to predict such binding events in novel DNA sequences.
If you use TFBS in your work, please cite "Lenhard B., Wasserman W.W. (2002) TFBS: Computational framework for transcription factor binding site analysis. Bioinformatics 18:1135-1136".
Note: the TFBS perl module is no longer under active development. All the functionality can be found in the TFBSTools Bioconductor package; users are highly encouraged to switch. <http://bioconductor.org/packages/TFBSTools/>
Andra paket besläktade med libtfbs-perl
|
|
|
-
- dep: bioperl
- Perl tools for computational molecular biology
-
- dep: libc6 (>= 2.14) [amd64]
- GNU C Library: Shared libraries
också ett virtuellt paket som tillhandahålls av libc6-udeb
- dep: libc6 (>= 2.4) [i386]
-
- dep: libdbi-perl
- Perl Database Interface (DBI)
-
- dep: libwww-perl
- simple and consistent interface to the world-wide web
-
- dep: pdl (>= 1:2.018-1ubuntu4)
- perl data language: Perl extensions for numerics
-
- dep: perl (>= 5.26.1-2ubuntu1)
- Larry Wall's Practical Extraction and Report Language
-
- dep: perlapi-5.26.1
- virtuellt paket som tillhandahålls av perl-base
-
- rec: libgd-gd2-perl
- virtuellt paket som tillhandahålls av libgd-perl
- eller libgd-gd2-noxpm-perl
- virtuellt paket som tillhandahålls av libgd-perl
Hämta libtfbs-perl
| Arkitektur | Paketstorlek | Installerad storlek | Filer |
|---|---|---|---|
| amd64 | 234,4 kbyte | 830 kbyte | [filförteckning] |
| i386 | 235,2 kbyte | 830 kbyte | [filförteckning] |