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Paket: qcumber (1.0.14+dfsg-1)

quality control of genomic sequences

QCPipeline is a tool for quality control. The workflow is as follows: 

 1. Quality control with FastQC
 2. Trim Reads with Trimmomatic
 3. Quality control of trimmed reads with FastQC
 4. Map reads against reference using bowtie2
 5. Classify reads with Kraken

Andra paket besläktade med qcumber

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  • dep: libjs-d3
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  • dep: libjs-jquery
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  • dep: python3
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  • dep: python3-biopython
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  • dep: python3-jinja2
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  • dep: python3-matplotlib
    Python based plotting system in a style similar to Matlab (Python 3)
  • dep: r-base-core
    GNU R core of statistical computation and graphics system
  • dep: r-bioc-savr
    GNU R parse and analyze Illumina SAV files
  • dep: r-cran-ggplot2
    implementation of the Grammar of Graphics
  • dep: r-cran-quantreg
    GNU R package for quantile regression

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