[ Källkod: gubbins ]
Paket: gubbins (2.3.1-1)
Länkar för gubbins
Trisquelresurser:
Hämta källkodspaketet gubbins:
Ansvarig:
Original Maintainers:
- Debian Med Packaging Team (E-postarkiv)
- Andreas Tille
- Aidan Delaney
Externa resurser:
- Hemsida [sanger-pathogens.github.io]
Liknande paket:
phylogenetic analysis of genome sequences
Gubbins supports rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences.
Gubbins (Genealogies Unbiased By recomBinations In Nucleotide Sequences) is an algorithm that iteratively identifies loci containing elevated densities of base substitutions while concurrently constructing a phylogeny based on the putative point mutations outside of these regions. Simulations demonstrate the algorithm generates highly accurate reconstructions under realistic models of short-term bacterial evolution, and can be run in only a few hours on alignments of hundreds of bacterial genome sequences.
Andra paket besläktade med gubbins
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- dep: fasttree
- phylogenetic trees from alignments of nucleotide or protein sequences
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- dep: libc6 (>= 2.14) [amd64]
- GNU C Library: Shared libraries
också ett virtuellt paket som tillhandahålls av libc6-udeb
- dep: libc6 (>= 2.4) [i386]
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- dep: python3
- interactive high-level object-oriented language (default python3 version)
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- dep: python3-biopython
- Python library for bioinformatics (implemented in Python 3)
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- dep: python3-dendropy
- DendroPy Phylogenetic Computing Library (Python 3)
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- dep: python3-nose
- test discovery and running for Python3 unittest
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- dep: python3-reportlab
- ReportLab library to create PDF documents using Python3
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- dep: raxml (>= 8)
- Randomized Axelerated Maximum Likelihood of phylogenetic trees
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- dep: zlib1g (>= 1:1.1.4)
- compression library - runtime
Hämta gubbins
| Arkitektur | Paketstorlek | Installerad storlek | Filer |
|---|---|---|---|
| amd64 | 49,3 kbyte | 197 kbyte | [filförteckning] |
| i386 | 50,3 kbyte | 200 kbyte | [filförteckning] |