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etiona  ] [  aramo  ]
[ Källkod: sprai  ]

Paket: sprai (0.9.9.23+dfsg-1)

Länkar för sprai

sprai

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Original Maintainers:

  • Debian Med Packaging Team (E-postarkiv)
  • Afif Elghraoui

Externa resurser:

  • Hemsida [zombie.cb.k.u-tokyo.ac.jp]

Liknande paket:

single-pass sequencing read accuracy improver

Sprai is a tool to correct sequencing errors in single-pass reads for de novo assembly. It is originally designed for correcting sequencing errors in single-molecule DNA sequencing reads, especially in Continuous Long Reads (CLRs) generated by PacBio RS sequencers. The goal of Sprai is not maximizing the accuracy of error-corrected reads. Instead, Sprai aims at maximizing the continuity (i.e., N50 contig length) of assembled contigs after error correction.

Andra paket besläktade med sprai

  • beror
  • rekommenderar
  • föreslår
  • dep: libc6 (>= 2.7)
    GNU C Library: Shared libraries
    också ett virtuellt paket som tillhandahålls av libc6-udeb
  • dep: ncbi-blast+ (>= 2.2.27)
    next generation suite of BLAST sequence search tools
  • dep: perl
    Larry Wall's Practical Extraction and Report Language
  • dep: time
    GNU time program for measuring CPU resource usage
  • sug: make
    utility for directing compilation
    också ett virtuellt paket som tillhandahålls av make-guile
  • sug: pbalign
    map Pacific Biosciences reads to reference DNA sequences
  • sug: pbgenomicconsensus
    Pacific Biosciences variant and consensus caller
  • sug: pbh5tools
    tools for manipulating Pacific Biosciences HDF5 files

Hämta sprai

Hämtningar för alla tillgängliga arkitekturer
Arkitektur Paketstorlek Installerad storlek Filer
amd64 1.479,6 kbyte1701 kbyte [filförteckning]
i386 1.478,7 kbyte1699 kbyte [filförteckning]